D080_Loop_modeling.py File Reference

Namespaces
	demo.D080_Loop_modeling

Functions
def	demo.D080_Loop_modeling.sample_single_loop_modeling (pdb_filename, loop_begin, loop_end, loop_cutpoint, frag_filename, frag_length, outer_cycles_low=2, inner_cycles_low=5, init_temp_low=2.0, final_temp_low=0.8, outer_cycles_high=5, inner_cycles_high=10, init_temp_high=2.2, final_temp_high=0.6, jobs=1, job_output='loop_output')
	Methods. More...

Variables
	demo.D080_Loop_modeling.extra_options
	demo.D080_Loop_modeling.parser = optparse.OptionParser()
	INTERPRETING RESULTS. More...
	demo.D080_Loop_modeling.dest
	demo.D080_Loop_modeling.default
	demo.D080_Loop_modeling.help
	demo.D080_Loop_modeling.options
	demo.D080_Loop_modeling.args
	demo.D080_Loop_modeling.pdb_filename = options.pdb_filename
	demo.D080_Loop_modeling.loop_begin = int(options.loop_begin)
	demo.D080_Loop_modeling.loop_end = int(options.loop_end)
	demo.D080_Loop_modeling.loop_cutpoint = int(options.loop_cutpoint)
	demo.D080_Loop_modeling.frag_filename = options.frag_filename
	demo.D080_Loop_modeling.frag_length = int(options.frag_length)
	demo.D080_Loop_modeling.outer_cycles_low = int(options.outer_cycles_low)
	demo.D080_Loop_modeling.inner_cycles_low = int(options.inner_cycles_low)
	demo.D080_Loop_modeling.init_temp_low = float(options.init_temp_low)
	demo.D080_Loop_modeling.final_temp_low = float(options.final_temp_low)
	demo.D080_Loop_modeling.outer_cycles_high = int(options.outer_cycles_high)
	demo.D080_Loop_modeling.inner_cycles_high = int(options.inner_cycles_high)
	demo.D080_Loop_modeling.init_temp_high = float(options.init_temp_high)
	demo.D080_Loop_modeling.final_temp_high = float(options.final_temp_high)
	demo.D080_Loop_modeling.jobs = int(options.jobs)
	demo.D080_Loop_modeling.job_output = options.job_output