run_sidechain.py File Reference

Namespaces
	run_sidechain

Functions
def	run_sidechain.smart_int (string)
def	run_sidechain.setup_hook ()

Variables
dictionary	run_sidechain.name_abbreviations
string	run_sidechain.default_name = 'sandbox'
string	run_sidechain.default_structure = 'structures/contrived/valine.6.pdb'
dictionary	run_sidechain.default_residues
	run_sidechain.parser = argparse.ArgumentParser()
	run_sidechain.default
	run_sidechain.action
	run_sidechain.dest
	run_sidechain.type
	run_sidechain.int
	run_sidechain.nargs
	run_sidechain.smart_int
	run_sidechain.job = scripting.Job()
	run_sidechain.arguments = parser.parse_args()
	run_sidechain.residues
	run_sidechain.pdb_string
string	run_sidechain.command = 'git', 'rev-parse', '--show-toplevel'
	run_sidechain.output = check_output(command, stderr=devnull)
	run_sidechain.rosetta_path = output.strip()
	run_sidechain.rosetta_subpath = lambda subpath: os.path.join(rosetta_path, subpath)
	run_sidechain.background
	run_sidechain.overwrite
	run_sidechain.foreground
	run_sidechain.hook
	run_sidechain.dry_run