mh.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::mh
	basic::options::OptionKeys::mh::score
	basic::options::OptionKeys::mh::path
	basic::options::OptionKeys::mh::harvest
	basic::options::OptionKeys::mh::match
	basic::options::OptionKeys::mh::dump
	basic::options::OptionKeys::mh::filter

Variables
BooleanOptionKey const	basic::options::OptionKeys::mh::mh
StringOptionKey const	basic::options::OptionKeys::mh::motif_out_file
FileVectorOptionKey const	basic::options::OptionKeys::mh::harvest_motifs
FileVectorOptionKey const	basic::options::OptionKeys::mh::print_motifs
FileVectorOptionKey const	basic::options::OptionKeys::mh::remove_duplicates
FileVectorOptionKey const	basic::options::OptionKeys::mh::dump_motif_pdbs
FileVectorOptionKey const	basic::options::OptionKeys::mh::merge_motifs
FileVectorOptionKey const	basic::options::OptionKeys::mh::merge_scores
BooleanOptionKey const	basic::options::OptionKeys::mh::merge_motifs_one_per_bin
BooleanOptionKey const	basic::options::OptionKeys::mh::gen_reverse_motifs_on_load
FileVectorOptionKey const	basic::options::OptionKeys::mh::dump_input_pdb
FileVectorOptionKey const	basic::options::OptionKeys::mh::score_pdbs
FileVectorOptionKey const	basic::options::OptionKeys::mh::sequence_recovery
FileVectorOptionKey const	basic::options::OptionKeys::mh::explicit_motif_score
FileVectorOptionKey const	basic::options::OptionKeys::mh::harvest_scores
FileOptionKey const	basic::options::OptionKeys::mh::print_scores
FileVectorOptionKey const	basic::options::OptionKeys::mh::dump_matching_motifs
BooleanOptionKey const	basic::options::OptionKeys::mh::score_across_chains_only
BooleanOptionKey const	basic::options::OptionKeys::mh::normalize_score_ncontact
IntegerOptionKey const	basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends
BooleanOptionKey const	basic::options::OptionKeys::mh::ignore_io_errors
RealOptionKey const	basic::options::OptionKeys::mh::motif_match_radius
RealVectorOptionKey const	basic::options::OptionKeys::mh::merge_similar_motifs
BooleanOptionKey const	basic::options::OptionKeys::mh::score::score
RealOptionKey const	basic::options::OptionKeys::mh::score::background_weight
RealOptionKey const	basic::options::OptionKeys::mh::score::ca_cb_clash_weight
BooleanOptionKey const	basic::options::OptionKeys::mh::score::noloops
BooleanOptionKey const	basic::options::OptionKeys::mh::score::nosheets
BooleanOptionKey const	basic::options::OptionKeys::mh::score::nohelix
BooleanOptionKey const	basic::options::OptionKeys::mh::score::spread_ss_element
RealOptionKey const	basic::options::OptionKeys::mh::score::min_cover_fraction
RealOptionKey const	basic::options::OptionKeys::mh::score::strand_pair_weight
RealOptionKey const	basic::options::OptionKeys::mh::score::anti_polar_weight
RealOptionKey const	basic::options::OptionKeys::mh::score::min_contact_pairs
RealOptionKey const	basic::options::OptionKeys::mh::score::max_contact_pairs
RealOptionKey const	basic::options::OptionKeys::mh::score::max_cb_dis
RealOptionKey const	basic::options::OptionKeys::mh::score::coverage_pow
BooleanOptionKey const	basic::options::OptionKeys::mh::score::use_ss1
BooleanOptionKey const	basic::options::OptionKeys::mh::score::use_ss2
BooleanOptionKey const	basic::options::OptionKeys::mh::score::use_aa1
BooleanOptionKey const	basic::options::OptionKeys::mh::score::use_aa2
BooleanOptionKey const	basic::options::OptionKeys::mh::score::use_log
BooleanOptionKey const	basic::options::OptionKeys::mh::path::path
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::biounit
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::biounit_ideal
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::pdb
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_SC_SC
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_SC_BB
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_BB_BB
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_BB_PH
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_BB_PO
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::motifs_PH_PO
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_SC_SC
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_SC_BB
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_BB_BB
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_BB_PH
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_BB_PO
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_PH_PO
StringVectorOptionKey const	basic::options::OptionKeys::mh::path::scores_frags
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::harvest
RealOptionKey const	basic::options::OptionKeys::mh::harvest::hash_cart_resl
RealOptionKey const	basic::options::OptionKeys::mh::harvest::hash_angle_resl
RealOptionKey const	basic::options::OptionKeys::mh::harvest::smoothing_factor
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::idealize
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::dump
RealOptionKey const	basic::options::OptionKeys::mh::harvest::min_bin_val
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::sep_aa
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::sep_aa1
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::sep_aa2
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::sep_ss
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::sep_dssp
RealVectorOptionKey const	basic::options::OptionKeys::mh::harvest::sep_lj
RealVectorOptionKey const	basic::options::OptionKeys::mh::harvest::sep_hb
RealVectorOptionKey const	basic::options::OptionKeys::mh::harvest::sep_nbrs
RealVectorOptionKey const	basic::options::OptionKeys::mh::harvest::sep_bfac
RealVectorOptionKey const	basic::options::OptionKeys::mh::harvest::sep_dist
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::weight_by_energy
RealOptionKey const	basic::options::OptionKeys::mh::harvest::max_rmsd
IntegerOptionKey const	basic::options::OptionKeys::mh::harvest::max_res
BooleanOptionKey const	basic::options::OptionKeys::mh::harvest::agg_with_max
RealOptionKey const	basic::options::OptionKeys::mh::harvest::multiplier
BooleanOptionKey const	basic::options::OptionKeys::mh::match::match
BooleanOptionKey const	basic::options::OptionKeys::mh::match::interface_only
BooleanOptionKey const	basic::options::OptionKeys::mh::match::ss
BooleanOptionKey const	basic::options::OptionKeys::mh::match::ss1
BooleanOptionKey const	basic::options::OptionKeys::mh::match::ss2
BooleanOptionKey const	basic::options::OptionKeys::mh::match::aa
BooleanOptionKey const	basic::options::OptionKeys::mh::match::aa1
BooleanOptionKey const	basic::options::OptionKeys::mh::match::aa2
BooleanOptionKey const	basic::options::OptionKeys::mh::dump::dump
IntegerOptionKey const	basic::options::OptionKeys::mh::dump::limit_per_pair
IntegerOptionKey const	basic::options::OptionKeys::mh::dump::max_per_res
RealOptionKey const	basic::options::OptionKeys::mh::dump::max_ca_dis
RealOptionKey const	basic::options::OptionKeys::mh::dump::max_rms
RealOptionKey const	basic::options::OptionKeys::mh::dump::resfile_min_pair_score
RealOptionKey const	basic::options::OptionKeys::mh::dump::resfile_min_tot_score
BooleanOptionKey const	basic::options::OptionKeys::mh::dump::resfile_dump
BooleanOptionKey const	basic::options::OptionKeys::mh::dump::symmetric_motifs
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::filter
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::filter_harvest
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::filter_io
StringOptionKey const	basic::options::OptionKeys::mh::filter::pdb
StringOptionKey const	basic::options::OptionKeys::mh::filter::lig
StringOptionKey const	basic::options::OptionKeys::mh::filter::motif_type
StringOptionKey const	basic::options::OptionKeys::mh::filter::restype1
StringOptionKey const	basic::options::OptionKeys::mh::filter::restype2
StringOptionKey const	basic::options::OptionKeys::mh::filter::restype
StringOptionKey const	basic::options::OptionKeys::mh::filter::restype_one
StringOptionKey const	basic::options::OptionKeys::mh::filter::not_restype
StringOptionKey const	basic::options::OptionKeys::mh::filter::not_restype_one
IntegerOptionKey const	basic::options::OptionKeys::mh::filter::seqsep
IntegerOptionKey const	basic::options::OptionKeys::mh::filter::max_seqsep
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::no_hb_bb
RealOptionKey const	basic::options::OptionKeys::mh::filter::mindist2
RealOptionKey const	basic::options::OptionKeys::mh::filter::maxdist2
StringOptionKey const	basic::options::OptionKeys::mh::filter::ss1
StringOptionKey const	basic::options::OptionKeys::mh::filter::ss2
StringOptionKey const	basic::options::OptionKeys::mh::filter::dssp1
StringOptionKey const	basic::options::OptionKeys::mh::filter::dssp2
StringOptionKey const	basic::options::OptionKeys::mh::filter::aa1
StringOptionKey const	basic::options::OptionKeys::mh::filter::aa2
RealOptionKey const	basic::options::OptionKeys::mh::filter::sasa
RealOptionKey const	basic::options::OptionKeys::mh::filter::faatr
RealOptionKey const	basic::options::OptionKeys::mh::filter::hb_sc
RealOptionKey const	basic::options::OptionKeys::mh::filter::hb_bb_sc
RealOptionKey const	basic::options::OptionKeys::mh::filter::hb_bb
RealOptionKey const	basic::options::OptionKeys::mh::filter::occupancy
RealOptionKey const	basic::options::OptionKeys::mh::filter::coorderr
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::uniformfrag
RealOptionKey const	basic::options::OptionKeys::mh::filter::faatr_or_hbbb
RealOptionKey const	basic::options::OptionKeys::mh::filter::faatr_or_hb
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::noloops
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::oneloop
BooleanOptionKey const	basic::options::OptionKeys::mh::filter::nodisulf
RealOptionKey const	basic::options::OptionKeys::mh::filter::score

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)