carbohydrates.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::carbohydrates
	basic::options::OptionKeys::carbohydrates::glycopeptide_docking
	basic::options::OptionKeys::carbohydrates::glycan_sampler
	basic::options::OptionKeys::carbohydrates::glycan_dock
	basic::options::OptionKeys::carbohydrates::clash_check

Variables
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::carbohydrates
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycam_pdb_format
StringOptionKey const	basic::options::OptionKeys::carbohydrates::linkage_conformer_data_file
StringOptionKey const	basic::options::OptionKeys::carbohydrates::saccharide_sequence
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::glycopeptide_docking
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::residue_to_glycosylate
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::anchor_residue
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::high_res_outer_cycles
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res_outer_cycles
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res_inner_cycles
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::high_res
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::substrate_type
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::tree_type
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::randomize_substrate_torsions
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::enable_backbone_moves_pp
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::prevent_anchor_repacking
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::sugardonor_residue
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::output_debug_pdbs
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::fix_weights
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::nevery_interface
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::ntotal_backbone
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::allow_glycan_torsion_moves
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::interface_distance
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::score_only
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::output_distance_metrics
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::preglycosylate_residues
StringOptionKey const	basic::options::OptionKeys::carbohydrates::glycopeptide_docking::preglycosylate_sugar_names
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_test
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_rounds
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::min_rings
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::final_min_glycans
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_movie
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_kt
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_refine
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::cartmin
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::tree_based_min_pack
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::population_based_conformer_sampling
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_sampler::use_gaussian_sampling
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::glycan_dock
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::n_repeats
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::refine_only
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::prepack_only
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::rand_glycan_jump_res
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage1_rotate_glycan_about_com
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage1_perturb_glycan_com_trans_mag
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage1_perturb_glycan_com_rot_mag
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage1_torsion_uniform_pert_mag
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::mc_kt
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::n_rigid_body_rounds
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::slide_glycan_into_contact
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage2_trans_mag
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::stage2_rot_mag
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::n_torsion_rounds
IntegerOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::full_packing_frequency
RealOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::interface_packing_distance
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::ramp_scorefxn
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::glycan_dock::watch_in_pymol
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::clash_check
StringVectorOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::glycan_branches
StringVectorOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::check_chains
RealOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::soft_clash
RealOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::cb_clash_distance
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::ignore_hydrogens
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::ignore_full_res_output
BooleanOptionKey const	basic::options::OptionKeys::carbohydrates::clash_check::output_per_glycan_data

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)