motif_hash_stuff.hh File Reference

#include <core/scoring/motif/motif_hash_stuff.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <numeric/geometry/hashing/xyzStripeHash.fwd.hh>
#include <numeric/xyzVector.hh>
#include <utility/fixedsizearray1.hh>
#include <numeric/geometry/hashing/SixDHasher.hh>
#include <numeric/xyzTransform.hh>
#include <boost/unordered_map.hpp>
#include <utility/SingletonBase.hh>
#include <boost/unordered_set.hpp>
#include <map>

Classes
class	core::scoring::motif::XformScore
struct	core::scoring::motif::RPM_FilterStats
class	core::scoring::motif::ResPairMotif
class	core::scoring::motif::ResPairMotifMetaBinner
class	core::scoring::motif::ResPairMotifs
class	core::scoring::motif::MotifHit
class	core::scoring::motif::MotifHitStats
class	core::scoring::motif::MotifHits
class	core::scoring::motif::ResPairMotifQuery
struct	core::scoring::motif::XformSummary
class	core::scoring::motif::MotifHash
class	core::scoring::motif::MotifHashManager

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::motif

Typedefs
typedef utility::pointer::shared_ptr< MotifRotamerSetOperation >	core::scoring::motif::MotifRotamerSetOperationOP
typedef utility::pointer::shared_ptr< MotifRotamerSetOperation const >	core::scoring::motif::MotifRotamerSetOperationCOP
typedef utility::vector1< Real >	core::scoring::motif::Reals
typedef utility::vector1< Size >	core::scoring::motif::Sizes
typedef utility::vector1< int >	core::scoring::motif::Ints
typedef utility::vector1< float >	core::scoring::motif::Floats
typedef utility::vector1< bool >	core::scoring::motif::Bools
typedef numeric::xyzVector< core::Real >	core::scoring::motif::Vec
typedef numeric::xyzMatrix< core::Real >	core::scoring::motif::Mat
typedef numeric::xyzTransform< core::Real >	core::scoring::motif::Xform
typedef std::map< std::string, XformScore >	core::scoring::motif::XformScoreSringMap
typedef utility::vector1< ResPairMotif const * >	core::scoring::motif::ResPairMotifPtrs
typedef boost::unordered_map< ResPairMotifMetaBinner::Key, XformScoreOP >	core::scoring::motif::XformScoreMap
typedef std::map< std::string, ResPairMotifs >	core::scoring::motif::ResPairMotifsStringMap
typedef boost::unordered_map< ResPairMotifMetaBinner::Key, ResPairMotifs >	core::scoring::motif::ResPairMotifsMap
typedef std::map< std::string, MotifHashOP >	core::scoring::motif::MotifHashStringMap

Enumerations
enum	core::scoring::motif::MotifMatchOverlapReq {   core::scoring::motif::NO_OVERLAP =1 , core::scoring::motif::SMALL_OVERLAP , core::scoring::motif::MATCH_ROTAMER , core::scoring::motif::MATCH_AA ,   core::scoring::motif::MATCH_HYDROPHOBICITY , core::scoring::motif::MATCH_ANY }

Functions
ostream &	core::scoring::motif::operator<< (ostream &out, XformScore const &xh)
ostream &	core::scoring::motif::operator<< (ostream &out, XformScoreSringMap const &x)
ostream &	core::scoring::motif::operator<< (ostream &out, RM_Type const &x)
ostream &	core::scoring::motif::operator<< (ostream &out, RPM_Type const &x)
ostream &	core::scoring::motif::operator<< (ostream &out, ResPairMotif const &x)
std::istream &	core::scoring::motif::operator>> (std::istream &in, ResPairMotif &x)
std::ostream &	core::scoring::motif::operator<< (std::ostream &out, XformScoreMap const &x)
bool	core::scoring::motif::read_motifs_binary (string const &fname, ResPairMotifs &motifs)
bool	core::scoring::motif::read_motifs_binary (std::istream &in, ResPairMotifs &motifs)
bool	core::scoring::motif::read_motifs_binary (utility::vector1< std::string > const &fnames, ResPairMotifs &motifs)
bool	core::scoring::motif::write_motifs_binary (ostream &out, ResPairMotifs const &motifs)
bool	core::scoring::motif::write_motifs_binary (string const &fname_in, ResPairMotifs const &motifs)
void	core::scoring::motif::filter_motifs (ResPairMotifs const &motifs_in, ResPairMotifs &motifs_out)
void	core::scoring::motif::filter_motifs (ResPairMotifs &motifs)
ostream &	core::scoring::motif::operator<< (ostream &out, MotifHit const &h)
ostream &	core::scoring::motif::operator<< (ostream &out, MotifHash const &x)
std::istream &	core::scoring::motif::operator>> (std::istream &in, MotifHash &x)
void	core::scoring::motif::preload_motif_data (MotifHashManager &mhman)
void	core::scoring::motif::load_motifs (utility::vector1< std::string > const &fnames, ResPairMotifs &motifs, ResPairMotifsStringMap *map=nullptr)
void	core::scoring::motif::load_motifs (string const &fname, ResPairMotifs &motifs, ResPairMotifsStringMap *map)

Variables
static const numeric::Xforms	core::scoring::motif::XsI = numeric::Xforms(1,numeric::Xform::identity())