consensus_sequence_parsers.cc File Reference

Definitions for helper functions for the parsing of enzyme consensus sequences. More...

#include <core/enzymes/consensus_sequence_parsers.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::enzymes

Functions
utility::vector1< std::string >	core::enzymes::get_AA_3_letter_codes_or_punctuation_from_1_letter_code_at_position (std::string const &sequence, uint &char_pos)
utility::vector1< utility::vector1< std::string > >	core::enzymes::get_3_letter_codes_from_peptide_consensus_sequence (std::string const &sequence)
	Parse a peptide consensus sequence and return a list of AA residue 3-letter codes. More...
utility::vector1< utility::vector1< std::string > >	core::enzymes::get_3_letter_codes_from_NA_consensus_sequence (std::string const &sequence)
	Parse a nucleic acid consensus sequence and return a list of NA residue 3-letter codes. More...
utility::vector1< utility::vector1< std::string > >	core::enzymes::get_codes_from_saccharide_consensus_sequence (std::string const &sequence)
	Parse a saccharide consensus sequence and return a list of monosaccharide residue codes. More...

Detailed Description

Definitions for helper functions for the parsing of enzyme consensus sequences.

Author

Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu