GenericBondedPotential.cc File Reference

#include <core/scoring/GenericBondedPotential.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/pose/Pose.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/conformation/Residue.hh>
#include <numeric/constants.hh>
#include <numeric/deriv/distance_deriv.hh>
#include <numeric/deriv/angle_deriv.hh>
#include <numeric/deriv/dihedral_deriv.hh>
#include <core/scoring/DerivVectorPair.hh>
#include <basic/Tracer.hh>
#include <math.h>
#include <iostream>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>
#include <core/chemical/AtomTypeSet.hh>

Classes
class	core::scoring::BondOrderParser

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring

Enumerations
enum	core::scoring::ReadMode {   core::scoring::rmNONE , core::scoring::rmATOM , core::scoring::rmBOND , core::scoring::rmANGLE ,   core::scoring::rmTORSION , core::scoring::rmIMPROPER }

Functions
static basic::Tracer	core::scoring::TR ("core.scoring.GenericBondedPotential")
uint64_t	core::scoring::get_parameter_hash (Size bondtypr, Size type1, Size type2, Size type3=0, Size type4=0)
	compress 5 values into one unsigned int; use 12 bits for each More...
core::Size	core::scoring::bin_from_bond (core::chemical::BondName bn, core::chemical::BondRingness br)
	convert a bond type to a bin index More...
utility::vector1< core::Size >	core::scoring::bondorders_map (std::string bt)
	helper function to convert string specification of bondorders to indices More...