Rosetta
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contains the start/stop points of a continuous region of sequence and knowledge of how to sample insertion positions from it according to an underlying distribution. Certain residues within the region may not be movable. Current behavior mimics but improves upon existing end-biased selection.
class that defines the interface for choosing a fragment from set of possibilities. This class is based on the observation that fragment insertion methods differ primarily in the manner in which they choose from among a set of possibilities.