LigandDiscoverySearch Member List

This is the complete list of members for LigandDiscoverySearch, including all inherited members.

all_residues_	LigandDiscoverySearch	private
create_protein_representation_matrix(core::Size &x_shift, core::Size &y_shift, core::Size &z_shift, int &x_bound_int, int &y_bound_int, int &z_bound_int)	LigandDiscoverySearch	private
discover(std::string output_prefix)	LigandDiscoverySearch
get_all_residues()	LigandDiscoverySearch
get_motif_library()	LigandDiscoverySearch
get_motif_sublibrary_by_aa(std::string residue_name)	LigandDiscoverySearch
get_working_pose()	LigandDiscoverySearch
get_working_position()	LigandDiscoverySearch
ligand_clash_check(core::conformation::ResidueOP ligresOP, core::Size x_shift, core::Size y_shift, core::Size z_shift, int x_bound_int, int y_bound_int, int z_bound_int)	LigandDiscoverySearch	private
LigandDiscoverySearch(core::pose::PoseOP pose_from_PDB, protocols::motifs::MotifCOPs motif_library, utility::vector1< core::conformation::ResidueOP > all_residues, core::Size working_position)	LigandDiscoverySearch
LigandDiscoverySearch()	LigandDiscoverySearch	private
motif_library_	LigandDiscoverySearch	private
motif_library_for_select_residue_	LigandDiscoverySearch	private
protein_representation_matrix_	LigandDiscoverySearch	private
set_all_residues(utility::vector1< core::conformation::ResidueOP > all_residues)	LigandDiscoverySearch
set_motif_library(protocols::motifs::MotifCOPs motif_library)	LigandDiscoverySearch
set_motif_library(protocols::motifs::MotifLibrary motif_library)	LigandDiscoverySearch
set_working_pose(core::pose::PoseOP pose_from_PDB)	LigandDiscoverySearch
set_working_pose(core::pose::Pose pose_from_PDB)	LigandDiscoverySearch
set_working_position(core::Size working_position)	LigandDiscoverySearch
working_pose_	LigandDiscoverySearch	private
working_position_	LigandDiscoverySearch	private
~LigandDiscoverySearch()	LigandDiscoverySearch