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| void | core::pose::jumps_from_pose (core::pose::Pose const &pose, Jumps &jumps) |
| | Retrieves jump information from <pose>, storing the result in <jumps>. Jumps are keyed by their jump id. More...
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| std::map< core::Size, char > | core::pose::conf2pdb_chain (core::pose::Pose const &pose) |
| | get Conformation chain number -> PDBInfo chain mapping More...
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| utility::vector1< core::Size > | core::pose::get_chains (core::pose::Pose const &pose) |
| | Get all the chain numbers from conformation. More...
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| core::Size | core::pose::chain_end_res (Pose const &pose, core::Size const chain) |
| | compute last residue number of a chain More...
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| utility::vector1< core::Size > | core::pose::chain_end_res (Pose const &pose) |
| | compute last residue numbers of all chains More...
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| utility::vector1< bool > | core::pose::compute_unique_chains (Pose &pose) |
| | Compute uniq chains in a complex @detail Returns a vector of pose length with true/false of uniq chain. More...
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| bool | core::pose::renumber_pdbinfo_based_on_conf_chains (core::pose::Pose &pose, bool fix_chains, bool const start_from_existing_numbering, bool const keep_insertion_codes, bool const rotate_chain_ids) |
| | renumber PDBInfo based on Conformation chains; each chain starts from 1 More...
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| bool | core::pose::has_chain (std::string const &chain, core::pose::Pose const &pose) |
| | Does the pose have a residue with the given chain letter. More...
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| bool | core::pose::has_chain (char const &chain, core::pose::Pose const &pose) |
| | Does the pose have a residue with the given chain letter. More...
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| bool | core::pose::has_chain (core::Size chain_id, core::pose::Pose const &pose) |
| | Does the pose have a residue with the given chain number. More...
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| utility::vector1< core::Size > | core::pose::get_chain_ids_from_chains (utility::vector1< std::string > const &chains, core::pose::Pose const &pose) |
| | Get all chain numbers for the residues with the given chain letters. More...
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| utility::vector1< core::Size > | core::pose::get_chain_ids_from_chains (utility::vector1< char > const &chains, core::pose::Pose const &pose) |
| | Get all chain numbers for the residues with the given chain letters. More...
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| utility::vector1< core::Size > | core::pose::get_chain_ids_from_chain (std::string const &chain, core::pose::Pose const &pose) |
| | Get all chain numbers for the residues with the given chain letter. More...
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| utility::vector1< core::Size > | core::pose::get_chain_ids_from_chain (char const &chain, core::pose::Pose const &pose) |
| | Get all chain numbers for the residues with the given chain letter. More...
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| core::Size | core::pose::get_chain_id_from_chain (std::string const &chain, core::pose::Pose const &pose) |
| | Attempt to get the chain number which correspond to the given chain letter. More...
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| core::Size | core::pose::get_chain_id_from_chain (char const &chain, core::pose::Pose const &pose) |
| | Attempt to get the chain number which correspond to the given chain letter. More...
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| char | core::pose::get_chain_from_chain_id (core::Size const &chain_id, core::pose::Pose const &pose) |
| | Get the chain letter for the first residue in a given chain number. More...
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| std::set< core::Size > | core::pose::get_jump_ids_from_chain_ids (std::set< core::Size > const &chain_ids, core::pose::Pose const &pose) |
| | Attempt to get jump IDs which correspond to the given chain number. More...
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| core::Size | core::pose::get_jump_id_from_chain_id (core::Size const &chain_id, core::pose::Pose const &pose) |
| | Attempt to get the jump number which correspond to the given chain number. More...
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| utility::vector1< core::Size > | core::pose::get_jump_ids_from_chain (char const &chain, core::pose::Pose const &pose) |
| | Get all the jump numbers for the given chain letter. More...
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| utility::vector1< core::Size > | core::pose::get_jump_ids_from_chain (std::string const &chain, core::pose::Pose const &pose) |
| | Get all the jump numbers for the given chain letter. More...
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| core::Size | core::pose::get_jump_id_from_chain (std::string const &chain, core::pose::Pose const &pose) |
| | Get the jump number for the given chain letter. More...
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| core::Size | core::pose::get_jump_id_from_chain (char const &chain, core::pose::Pose const &pose) |
| | Get the jump number for the given chain letter. More...
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| core::Size | core::pose::get_chain_id_from_jump_id (core::Size const &jump_id, core::pose::Pose const &pose) |
| | Get the chain ID of the residue directly built by the given jump. More...
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| char | core::pose::get_chain_from_jump_id (core::Size const &jump_id, core::pose::Pose const &pose) |
| | Get the chain letter of the chain built by the given jump. More...
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| utility::vector1< core::Size > | core::pose::get_resnums_for_chain (core::pose::Pose const &pose, char chain) |
| | Get a vector of all residues numbers which are represented by this chain letter. More...
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| utility::vector1< core::Size > | core::pose::get_resnums_for_chain_id (core::pose::Pose const &pose, core::Size chain_id) |
| | Get a vector of all residues numbers which are represented by this chain number. More...
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| core::conformation::ResidueCOPs | core::pose::get_chain_residues (core::pose::Pose const &pose, core::Size chain_id) |
| | Get all residues which correspond to the given chain number. More...
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| core::conformation::ResidueCOPs | core::pose::get_residues_from_chains (core::pose::Pose const &pose, utility::vector1< core::Size > const &chain_ids) |
| | Get all residues which correspond to the given chain numbers. More...
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| bool | core::pose::res_in_chain (core::pose::Pose const &pose, core::Size resnum, std::string const &chain) |
| | Does this residue number have this chain letter? More...
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| core::Size | core::pose::get_hash_from_pos (PointPosition const &pos) |
| | Utility function for get_hash_from_chain() - get hash for an isolated position. More...
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| core::Size | core::pose::get_hash_from_chain (char const &chain, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues with the given chain letter. More...
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| core::Size | core::pose::get_hash_excluding_chain (char const &chain, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues which don't have the given chain letter. More...
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| std::string | core::pose::get_sha1_hash_from_chain (char const &chain, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues with the given chain letter. More...
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| std::string | core::pose::get_sha1_hash_from_chains (utility::vector1< std::string > const &chains, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues with the given chain letters. More...
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| std::string | core::pose::get_sha1_hash_excluding_chain (char const &chain, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues which don't have the given chain letter. More...
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| std::string | core::pose::get_sha1_hash_excluding_chains (utility::vector1< std::string > const &chains, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues which don't have the given chain letter. More...
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| std::string | core::pose::get_sha1_hash_excluding_chain (std::string const &chain, core::pose::Pose const &pose, std::string const &extra_label="") |
| | Get a value representing the position of all the atoms for residues which don't have the given chain letter. More...
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