reference_frames.cc File Reference

#include <core/pose/motif/reference_frames.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <utility/vector1.hh>
#include <utility/tools/make_vector1.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::pose
	core::pose::motif

Typedefs
using	core::pose::motif::Xform = xyzTransform< Real >
using	core::pose::motif::Vec = xyzVector< Real >
using	core::pose::motif::PoseCR = const Pose &
using	core::pose::motif::SizeCR = const Size &
using	core::pose::motif::AIDs = utility::vector1< core::id::AtomID >

Functions
static AIDs	core::pose::motif::get_AIDs (Pose const &pose, core::Size const &ir, utility::vector1< std::string > const &anames)
Vec	core::pose::motif::a (Pose const &p, numeric::Size const &i, string const &s)
Xform	core::pose::motif::get_backbone_reference_frame (xyzVector< Real > const &N, xyzVector< Real > const &CA, xyzVector< Real > const &C)
Xform	core::pose::motif::get_backbone_reference_frame (Pose const &p, numeric::Size const &i)
Xform	core::pose::motif::get_nterminal_peptide_bond_reference_frame (xyzVector< Real > const &H, xyzVector< Real > const &N, xyzVector< Real > const &CA)
Xform	core::pose::motif::get_nterminal_peptide_bond_reference_frame (Pose const &p, numeric::Size const &i)
Xform	core::pose::motif::get_cterminal_peptide_bond_reference_frame (xyzVector< Real > const &O, xyzVector< Real > const &C, xyzVector< Real > const &CA)
Xform	core::pose::motif::get_cterminal_peptide_bond_reference_frame (Pose const &p, numeric::Size const &i)
AIDs	core::pose::motif::get_nterminal_peptide_bond_reference_frame_atomids (Pose const &p, numeric::Size const &i, bool extra)
AIDs	core::pose::motif::get_cterminal_peptide_bond_reference_frame_atomids (Pose const &p, numeric::Size const &i, bool extra)
Xform	core::pose::motif::get_sidechain_reference_frame (Pose const &p, numeric::Size const &i)
Xform	core::pose::motif::get_frame_ala (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_cys (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_gly (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_ile (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_lys (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_met (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_asn (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_pro (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_gln (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_arg (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_ser (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_thr (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_vee (Vec const &a, Vec const &b, Vec const &c)
Xform	core::pose::motif::get_frame_val (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_leu (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_glu (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_asp (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_his (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_phe (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_tyr (PoseCR p, SizeCR i)
Xform	core::pose::motif::get_frame_trp (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_backbone_reference_frame_atomids (Pose const &pose, core::Size const &ir)
AIDs	core::pose::motif::get_backbone_reference_frame_atomids_with_downstream (Pose const &pose, core::Size const &ir)
AIDs	core::pose::motif::get_sidechain_reference_frame_atomids (Pose const &pose, core::Size const &ir)
AIDs	core::pose::motif::get_sidechain_reference_frame_atomids_with_downstream (Pose const &pose, core::Size const &ir)
AIDs	core::pose::motif::get_atoms_ala (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_arg (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_asn (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_asp (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_cys (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_gln (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_glu (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_gly (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_his (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_ile (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_leu (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_lys (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_met (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_phe (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_pro (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_ser (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_thr (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_trp (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_tyr (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_val (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_ala_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_arg_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_asn_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_asp_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_cys_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_gln_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_glu_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_gly_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_his_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_ile_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_leu_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_lys_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_met_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_phe_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_pro_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_ser_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_thr_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_trp_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_tyr_downstream (PoseCR p, SizeCR i)
AIDs	core::pose::motif::get_atoms_val_downstream (PoseCR p, SizeCR i)