This is the complete list of members for IdentifyLigandMotifs, including all inherited members.

evaluate_motifs_of_pose(core::pose::PoseOP working_pose, std::map< protocols::motifs::motif_atoms, protocols::motifs::MotifCOPs > mymap, std::string const &pdb_name)	IdentifyLigandMotifs
get_atom_trios(utility::vector1< utility::vector1< core::Size > > &motif_indices_list, utility::vector1< utility::vector1< core::Size > > &all_motif_indices, core::conformation::Residue const &ligres)	IdentifyLigandMotifs
get_hbond_score(core::pose::Pose &pose, core::Size pos1, core::Size pos2, core::scoring::ScoreFunction &scorefxn)	IdentifyLigandMotifs	private
get_motif_library()	IdentifyLigandMotifs
get_packing_score(core::pose::Pose &pose, core::Size pos1, core::Size pos2, core::scoring::ScoreFunction &scorefxn)	IdentifyLigandMotifs	private
IdentifyLigandMotifs()	IdentifyLigandMotifs
ligand_to_residue_analysis(core::Size lig_pos, core::Size prot_pos, core::pose::Pose &pose, std::string const &pdb_name, protocols::motifs::MotifLibrary &motifs, core::scoring::ScoreFunctionOP scorefxn, utility::vector1< utility::vector1< core::Size > > const &motif_indices_list)	IdentifyLigandMotifs	private
motif_file_output_	IdentifyLigandMotifs	private
motif_library_	IdentifyLigandMotifs	private
motif_pdb_output_path_	IdentifyLigandMotifs	private
output_motifs_	IdentifyLigandMotifs	private
output_motifs_as_pdb_	IdentifyLigandMotifs	private
output_single_motif_to_MotifLibrary(core::pose::Pose &src_pose, protocols::motifs::MotifLibrary &motifs, std::string const &pdb_name, core::Size prot_pos, core::Size lig_pos, utility::vector1< core::Size > &lig_atoms, core::Real pack_score, core::Real hb_score)	IdentifyLigandMotifs	private
output_single_motif_to_pdb(core::pose::Pose &src_pose, std::string const &pdb_name, core::Size prot_pos, core::Size lig_pos, utility::vector1< core::Size > &lig_atoms)	IdentifyLigandMotifs	private
process_file_list()	IdentifyLigandMotifs
process_for_motifs(core::pose::Pose &pose, std::string const &pdb_name, protocols::motifs::MotifLibrary &motifs)	IdentifyLigandMotifs
write_motifs_to_disk()	IdentifyLigandMotifs
~IdentifyLigandMotifs()	IdentifyLigandMotifs