SWAligner.hh File Reference

class definition for a class that aligns two Sequence objects using a ScoringScheme object and the Smith-Waterman alignment algorithm. More...

#include <core/sequence/Aligner.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/Sequence.fwd.hh>
#include <core/sequence/SequenceAlignment.fwd.hh>

Classes
class	core::sequence::SWAligner

Namespaces
	core
	A class for reading in the atom type properties.
	core::sequence

Detailed Description

class definition for a class that aligns two Sequence objects using a ScoringScheme object and the Smith-Waterman alignment algorithm.

class definition for a class that aligns two Sequence objects using ScoringScheme and the Smith-Waterman alignment algorithm.

Author

James Thompson