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Code and Demo

The executable for helix_from_sequence can be found in Rosetta/main/source/src/apps/public/membrane/helix_from_sequence.cc

A demo for this application can be found in Rosetta/demos/protocol_captures/helix_from_sequence

Description

A full description of the algorithm can be found in

  • Koehler Leman, J., Mueller, B. K. & Gray, J. J. Expanding the toolkit for membrane protein modeling in Rosetta. Bioinformatics 11, 1–3 (2016).

A protocol capture with a zip folder of corresponding files is available in the Supplement of this paper.

The implementation is based on RosettaMP:

  • Alford, R. F., Koehler Leman, J., Weitzner, B. D., Duran, A. M., Tilley, D. C., Elazar, A. & Gray, J. J. An Integrated Framework Advancing Membrane Protein Modeling and Design. PLoS Comput. Biol. 11, e1004398 (2015).

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