SymDockProtocol

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SymDockProtocol

Autogenerated Tag Syntax Documentation:

Symmetric oligomer docking.

<SymDockProtocol name="(&string;)" dock_rtmin="(&bool;)" sc_min="(&bool;)"
        max_repeats="(&bool;)" dock_ppk="(&bool;)" fullatom="(&bool;)"
        local_refine="(&bool;)" view="(&bool;)" docking_score_low="(&string;)"
        docking_score_high="(&string;)"
        task_operations="(&task_operation_comma_separated_list;)"
        packer_palette="(&named_packer_palette;)" />

dock_rtmin: Does rotamer trials with minimization.
sc_min: Does sidechain minimization of interface residues.
max_repeats: If a decoy does not pass the low- and high-resolution filters, how many attempts to make before failure.
dock_ppk: Docking prepack mode.
fullatom: Enable full-atom input of PDB or centroid structures.
local_refine: Do a local refinement of the docking position (high resolution).
view: Decide whether to use the viewer (graphical) or not.
docking_score_low: Name of score function to use
docking_score_high: Name of score function to use
task_operations: A comma-separated list of TaskOperations to use.
packer_palette: A previously-defined PackerPalette to use, which specifies the set of residue types with which to design (to be pruned with TaskOperations).