MembraneTopology

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MembraneTopology

Simple wrapper around the MembraneTopology object in core/scoring. Takes in a membrane span file and inserts the membrane topology into the pose cache. The pose can then be used with a membrane score function.

<MembraneTopology name=(&string) span_file=(&string)/>

Span files have the following structure:

comment line
1 23 number of tm helices, number of residues
parallel topology
n2c n2c or c2n
1 27 1 27 the residue spans in rosetta-internal numbering. For some reason needs to be written twice for each membrane span