Getting Started

Build Documentation

Rosetta Tutorials

Rosetta Basics

Rosetta Applications

Rosetta Scripting Interfaces

Development Documentation

Internal Documentation

How to Write Documentation

FAQ

Glossary

Encyclopedia

Options List

Release Notes

Basics

  • Use dot-parens notation.
  • Can use parentheses ((,)), square brackets ([,]), and curly brackets ({,}).
  • After first line, can put anything you want.

Examples

Simple

(....()....)
ucagguaagcag
in demos/public/RNA_Denovo/chunk002_1lnt_.secstruct.

Complex

For GIR1 ribozyme (RNA puzzle5): 

(((((..((((((.(((((((((.......))))))))).((((((((((((((......(((((...((((((((((....))))....)).))))((....)).....[[[[[...))))).((((...)))))))))))))...]]]]].((((....))))....))))).))))))..)))))
gguuggguugggaaguaucauggcuaaucaccaugaugcaaucggguugaacacuuaauuggguuaaaacggugggggacgaucccguaacauccguccuaacggcgacagacugcacggcccugccucuuagguguguucaaugaacagucguuccgaaaggaagcauccgguaucccaagacaauc
in tests/integration/tests/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/GIR1_secstruct.txt

See Also