Here is a list of Score Function options
-score:weights Name of weights file (without extension .wts)
Default="talaris2013". [String]
-score:patch Name of patch file (without extension)
Default="". [String]
-score:set_weights Modification to weights via the command line.
List of paired strings: -score::set_weights <score_type1> <setting1>
<score_type2> <setting2> ...
-score:empty Make an empty score - i.e. NO scoring. [Boolean]
-score:fa_max_dis How far does the FA pair potential go out to.
Default = '6.0'. [Real]
-score:fa_Hatr Turn on Lennard Jones attractive term for hydrogen
atoms. [Boolean]
-score:no_smooth_etables Revert to old style etables. [Boolean]
-score:etable_lr Lowers energy well at 6.5A. [Real]
-score:input_etables Read etables from files with given prefix. [String]
-score:output_etables Write out etables to files with given prefix. [String]
-score:rms_target Target of RMS optimization for RMS_Energy EnergyMethod'
Default='0.0' [Real]
-score:ramaneighbors Uses neighbor-dependent ramachandran maps
Default='false' [Boolean]
-score:symmetric_gly_tables Use a symmetric version of the Ramachandran and p_aa_pp tables for glycine
when sampling or scoring. Useful for sampling or scoring glycine in the
context of a mixed D/L amino acid peptide. As of 23 February 2016, this
flag also symmetrizes the RamaPrePro tables for glycine. Default='false'
[Boolean]
-score:optH_weights Name of weights file (without extension .wts) to use
during optH. [String]
-score:optH_patch Name of weights file (without extension .wts) to use
during optH. [String]
-score:hbond_bb_per_residue_energy In score tables, separate backbone hydrogens bond energies per residue.
(By default, bb hbonds are included in the total energy, but not per residue
energies. Note that this may lead to a slowdown in packing) [Boolean]