documentation written by Jonathan Weinstein jonathan.weinstein@weizmann.ac.il, Nov 2017

MPHelicalityEnergy

an energy term that penalizes the score of a pose for every residue in the membrane whose phi-psi duo is far from the optimal values for alpha-helices. the penalty is very severe, and so this is mostly useful for single-spanning proteins. in multi-spanning proteins, there are residues with non helical phi-psi duos, and so will be very severely penalised.