Back to Filters page.
Autogenerated Tag Syntax Documentation:
Filter based on the C-alpha RMSD to a reference structure.
<Rmsd name="(&string;)" reference_name="(&string;)" symmetry="(0 &bool;)"
chains="(&string;)" superimpose_on_all="(false &bool;)"
superimpose="(1 &bool;)" threshold="(5 ℜ)" by_aln="(&bool;)"
aln_files="(&string;)" template_names="(&string;)"
query_names="(&string;)" rms_residues_from_pose_cache="(1 &string;)"
confidence="(1.0 ℜ)" >
<rmsd resnum="(&refpose_enabled_residue_number;)"
pdb_num="(&refpose_enabled_residue_number;)" />
<span begin_res_num="(&refpose_enabled_residue_number;)"
begin_pdb_num="(&refpose_enabled_residue_number;)"
end_res_num="(&refpose_enabled_residue_number;)"
end_pdb_num="(&refpose_enabled_residue_number;)" />
<span_two begin_native="(&non_negative_integer;)"
end_native="(&non_negative_integer;)"
begin_pose="(&non_negative_integer;)"
end_pose="(&non_negative_integer;)" />
</Rmsd>
Subtag rmsd:
Subtag span:
Subtag span_two:
Calculates the Calpha RMSD over a user-specified set of residues. Superimposition is optional. Selections are additive, so choosing a chain, and individual residue, and span will result in RMSD calculation over all residues selected. If no residues are selected, the filter uses all residues in the pose.
By default, the RMSD will be calculated to the input pose (pose at parse time). Use -in:file:native <filename> or reference_name= to choose an alternate reference pose.