Back to Filters page.
Calculates the fraction sequence recovery of a pose compared to a reference pose. This is similar to the InterfaceRecapitulationMover mover, but does not require a design mover. Instead, the user can provide a list of task operations that describe which residues are designable in the pose. Works with symmetric poses and poses with symmetric "building blocks". Can also filter based on/report to the scorefile the number of mutations rather than the recovery rate if desired by using the report_mutations and mutation_threshold options. Will output the specific mutations to the tracer if the option verbose=1. The reference pose against which the recovery rate will be computed can be defined using the -in:file:native command-line flag. If that flag is not defined, the starting pose will be used as a reference.
<SequenceRecovery name="(&string)" rate_threshold="(0.0 &Real)" task_operations="(comma-delimited list of operations &string)" mutation_threshold="(100 &Size)" report_mutations="(0 &bool)" scorefxn="('talaris2013' &string)" verbose="(0 &bool)" />