Back to Mover page.
This mover carries out the initial perturbation phase of the RosettaDock algorithm. This contains the functions that create initial positions for docking. You can either randomize partner 1 or partner 2, spin partner 2, or perform a simple perturbation.
Most of these options are also described here.
<DockingInitialPerturbation randomize1="(bool)" randomize2="(bool)" use_ellipsoidal_randomization="(bool)" dock_pert="(bool,"false")" trans="(real)" rot="(real)" uniform_trans="(real)" spin="(bool)" center_at_interface="(bool)" slide="(bool)" name="(string)"/>| Option | Description |
|---|---|
| randomize1 | Randomize the first docking partner |
| randomize2 | Randomize the second docking partner |
| use_ellipsoidal_randomization | Use the EllipsoidalRandomizationMover instead of the RigidBodyRandomizeMover |
| dock_pert | Read in translational and rotational perturbations and apply to pose (default is false) |
| trans | Translational perturbation to apply before docking (requires dock_pert="true") |
| rot | Rotational perturbation to apply before docking (requires dock_pert="true") |
| uniform_trans | Use the UniformSphereTransMover |
| spin | Spin partner about its axis |
| center_at_interface | Center the spin at the interface |
| slide | Slide docking partners into contact |