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Runs the full (post refactoring) docking protocol with the defaults currently in trunk. This mover is not currently sensitive to symmetry.
<DockingProtocol name="&string" docking_score_low="(interchain_cen &string)" docking_score_high="(docking &string)" low_res_protocol_only="(0 &bool)" docking_local_refine(0 &bool) dock_min="(0 &bool)" ignore_default_docking_task="(0 &bool)" task_operations="('' comma-separated list)" partners="(&string)"/>