Autogenerated Tag Syntax Documentation:


Author: Jared Adolf-Bryfogle (jadolfbr@gmail.com) Collects data on an antibody including CDRs, interfaces of L_H, L_A, H_A, and LH_A (this can be set), and other metrics.

<AntibodyFeatures name="(&string;)" pack_separated="(true &bool;)"
        pack_together="(false &bool;)" dSASA_cutoff="(100 &real;)"
        compute_packstat="(true &bool;)"
        skip_all_antigen_analysis="(false &bool;)" scorefxn="(&string;)"
        interface="(&ab_interface_string;)" interfaces="(&ab_interface_list;)"
        cdr_definition="(&string;)" input_ab_scheme="(&string;)"
        include_proto_cdr4="(&bool;)" />
  • pack_separated: repack chains after separation (better evaluation of unbound state).
  • pack_together: repack the input before calculating bound state values
  • dSASA_cutoff: XRW TO DO currently unused parameter
  • compute_packstat: Compute interface packstat
  • skip_all_antigen_analysis: Do not report antigen analysis.
  • scorefxn: Name of the scoring function
  • interface: Definition of the interface
  • interfaces: Define multiple interface sections
  • cdr_definition: XRW TO DO
  • input_ab_scheme: XRW TO DO
  • include_proto_cdr4: XRW TO DO