scripting_documentation/RosettaScripts/xsd/mover_AddMembraneMover

Autogenerated Tag Syntax Documentation:

Add membrane to a pose

<AddMembraneMover name="(&string;)" restore_lazaridis_IMM1_behavior="(&bool;)"
        lipid_composition="(&string;)" temperature="(&real;)"
        spanfile="(&string;)" anchor_rsd="(&non_negative_integer;)"
        membrane_rsd="(&non_negative_integer;)" thickness="(&real;)"
        steepness="(&real;)" aqueous_pore="(&bool;)" membrane_core="(&real;)"
        span_starts="(&residue_number_cslist;)"
        span_ends="(&residue_number_cslist;)" span_starts_num="(&string;)"
        span_ends_num="(&string;)" span_orientations="(&string;)"
        transition_geometry="(&string;)" center="(&string;)" normal="(&string;)" >
    <Span start="(&non_negative_integer;)" end="(&non_negative_integer;)"
            orientation="(&string;)" />
</AddMembraneMover>

restore_lazaridis_IMM1_behavior: Restore Lazaridis IMM1 behavior
lipid_composition: Four letter code specifying the lipid composition
temperature: Temperature at which the lipid parameters were measured/calculated
spanfile: Path to input spanfile
anchor_rsd: Index of membrane residue anchor
membrane_rsd: Membrane residue position
thickness: Thickness of membrane. Score function is optimized to 15 Angstroms.
steepness: Steepness of membrane transition. Score function optimized to 10.
aqueous_pore: Initialize pore dimensions and estimate per-atom lipid accessibility given protein geometry
membrane_core: width of membrane ocre for Elazar calibrated LK potential
span_starts: comma separated list of span starting residues
span_ends: comma separated list of span ending residues
span_starts_num: comma separated list of span starting residues, in rosetta numbering
span_ends_num: comma separated list of span ending residues in rosetta_numbering
span_orientations: comma separated list of span orientations, only in2out or out2in allowed
transition_geometry: Geometry of implicit membrane
center: Position of center of membrane in format x,y,z
normal: Membrane normal vector in format x,y,z

Subtag Span:

start: residue where span starts
end: resdiue where span ends
orientation: span orientation, whether in2out or out2in

scripting_documentation/RosettaScripts/xsd/mover_AddMembraneMover_type