Autogenerated Tag Syntax Documentation:


Not documented. Appears to be some sort of relax analogue. Related to BackboneTorsionPerturbation

<BackboneTorsionSampler name="(&string;)" start_res="(&positive_integer;)"
        stop_res="(&positive_integer;)" native="(&string;)"
        increase_cycles="(&real;)" recover_low="(&bool;)" temp="(&real;)"
        local="(0 &non_negative_integer;)" nested="(2 &non_negative_integer;)"
        scorefxn="(&string;)"
        task_operations="(&task_operation_comma_separated_list;)"
        packer_palette="(&named_packer_palette;)"
        dump_snapshots="(&non_negative_integer;)"
        snapshot_prefix="(snapshot &string;)"
        snapshot_interval="(100 &positive_integer;)" />
  • start_res: nominally lower bound for a region to sample (NOTE: THIS PARAMETER IS IGNORED)
  • stop_res: nominally upper bound for a region to sample (NOTE: THIS PARAMETER IS IGNORED
  • native: file path to native pose, used to calculate gdtmm
  • increase_cycles: multiply cycle count by this
  • recover_low: recover the lowest-energy structure seen in the Monte Carlo trajectory at the end?
  • temp: Monte Carlo temperature
  • local: undocumented
  • nested: undocumented
  • scorefxn: use this scorefunction (from the SCOREFXN section)
  • task_operations: A comma-separated list of TaskOperations to use.
  • packer_palette: A previously-defined PackerPalette to use, which specifies the set of residue types with which to design (to be pruned with TaskOperations).
  • dump_snapshots: dump structures during sampling, Note that dump_snapshots must be set to make snapshot_prefix or snapshot_interval active
  • snapshot_prefix: prefix for structures dumped during sampling, Note that dump_snapshots must be set to make snapshot_prefix or snapshot_interval active
  • snapshot_interval: how frequently to dump structures during sampling, Note that dump_snapshots must be set to make snapshot_prefix or snapshot_interval active