Autogenerated Tag Syntax Documentation:


XRW TO DO

<BackrubDD name="(&string;)" partner1="(false &bool;)" partner2="(true &bool;)"
        interface_distance_cutoff="(8.0 &real;)"
        moves="(1000 &non_negative_integer;)"
        sc_move_probability="(0.25 &real;)"
        small_move_probability="(0.0 &real;)"
        bbg_move_probability="(0.25 &real;)" temperature="(0.6 &real;)"
        scorefxn="(&string;)"
        task_operations="(&task_operation_comma_separated_list;)"
        packer_palette="(&named_packer_palette;)" >
    <residue pdb_num="(&residue_number;)" res_num="(&non_negative_integer;)" />
    <span begin="(&refpose_enabled_residue_number;)"
            end="(&refpose_enabled_residue_number;)" />
</BackrubDD>
  • partner1: Backrub the first chain
  • partner2: Backrub the second chain
  • interface_distance_cutoff: Distance from the interface that counts for backrubbing
  • moves: Number of total moves to execute
  • sc_move_probability: Probability of making sidechain moves
  • small_move_probability: Probability of making small moves
  • bbg_move_probability: Probability of making big moves
  • temperature: Controls the monte-carlo accept temperature
  • scorefxn: Name of score function to use
  • task_operations: A comma-separated list of TaskOperations to use.
  • packer_palette: A previously-defined PackerPalette to use, which specifies the set of residue types with which to design (to be pruned with TaskOperations).

Subtag residue: Tags describing individual residues to be sampled

  • pdb_num: Residue number in PDB numbering (residue number + chain ID)
  • res_num: Residue number in Rosetta numbering (sequentially with the first residue in the pose being 1

Subtag span: Tags describing residue ranges to be sampled

  • begin: Beginning of residue range in PDB-or-refpose-or-seqpos notation
  • end: End of residue range in PDB-or-refpose-or-seqpos notation