scripting_documentation/RosettaScripts/xsd/mover_DesignProteinBackboneAroundDNA

Autogenerated Tag Syntax Documentation:

Performs a round flexible backbone sampling/design and loop design around DNA.

<DesignProteinBackboneAroundDNA name="(&string;)" type="(&bb_movement_types;)"
        gapspan="(&non_negative_integer;)" spread="(&non_negative_integer;)"
        cycles_outer="(&non_negative_integer;)"
        cycles_inner="(&non_negative_integer;)"
        repack_rate="(&non_negative_integer;)" temp_initial="(&real;)"
        temp_final="(&real;)" designable_second_shell="(&bool;)"
        scorefxn="(&string;)"
        task_operations="(&task_operation_comma_separated_list;)"
        packer_palette="(&named_packer_palette;)" />

type: Backbone movement type
gapspan: Number of residues allowed between dna contacting residues for loop building.
spread: Loop start/ends are extended by this number of residues.
cycles_outer: outer cycles of CCD/backrub (MC)
cycles_inner: inner cycles of CCD/backrub (MC)
repack_rate: repack rate of CCD/backrub (MC)
temp_initial: Initial temp of backrub (MC)
temp_final: Final temp of backrub (MC)
designable_second_shell: Allow design of residues in the neighborhood of the design shell
scorefxn: Name of score function to use
task_operations: A comma-separated list of TaskOperations to use.
packer_palette: A previously-defined PackerPalette to use, which specifies the set of residue types with which to design (to be pruned with TaskOperations).

scripting_documentation/RosettaScripts/xsd/mover_DesignProteinBackboneAroundDNA_type