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Autogenerated Tag Syntax Documentation:

Perform alignment-based segment lookup in target protein structure db. TODO fordas

<DirectSegmentLookupMover name="(&string;)" structure_store="(&string;)"
        rmsd_tolerance="(.5 &real;)" segment_cluster_tolerance="(1.5 &real;)"
        max_insertion_length="(5 &non_negative_integer;)"
        max_num_results="(0 &non_negative_integer;)"
        from_chain="(1 &positive_integer;)" to_chain="(2 &positive_integer;)"
        stored_subset_name="(&string;)" overwrite_stored_subset="(false &bool;)"
        label_insertion="(&string;)" output_lookup_count="(&string;)"
        output_lookup_length="(&string;)" />
  • structure_store: (REQUIRED) Path of target struture store.
  • rmsd_tolerance: Lookup endpoint rmsd tolerance.
  • segment_cluster_tolerance: Segment clustering rmsd tolerance.
  • max_insertion_length: Maximum segment insertion length.
  • max_num_results: Maximum number of result segments returned, no limit if 0.
  • from_chain: Upstream chain for connection.
  • to_chain: Downstream chain for connection.
  • stored_subset_name: Store inserted residues as residue subset, recall with StoredResidueSubset.
  • overwrite_stored_subset: Overwrite stored subset if already present.
  • label_insertion: Label inserted residues in pdbinfo.
  • output_lookup_count: Report lookup result cluster size as output pose score.
  • output_lookup_length: Report lookup result length as output pose score.