scripting_documentation/RosettaScripts/xsd/mover_DnaInterfaceMultiStateDesign

Autogenerated Tag Syntax Documentation:

Performs multistate design on DNA interfaces

<DnaInterfaceMultiStateDesign name="(&string;)"
        generations="(&non_negative_integer;)"
        pop_size="(&non_negative_integer;)" num_packs="(&non_negative_integer;)"
        pop_from_ss="(&non_negative_integer;)"
        numresults="(&non_negative_integer;)"
        fraction_by_recombination="(&real;)" mutate_rate="(&real;)"
        boltz_temp="(&real;)" anchor_offset="(&real;)"
        checkpoint_prefix="(&string;)"
        checkpoint_interval="(&non_negative_integer;)" checkpoint_gz="(&bool;)"
        checkpoint_rename="(&bool;)" scorefxn="(&string;)"
        task_operations="(&task_operation_comma_separated_list;)"
        packer_palette="(&named_packer_palette;)" />

generations: Number of generations for the genetic algorithm to evolve
pop_size: number of sequences per generation
num_packs: number of times to call the simulated annealer to find the best rotamer configuration for a given sequence
pop_from_ss: number of sequences to include in the initial population that are created by mutation of the sequence determined by full redesign
numresults: number of sequences to output structures for, starting with the lowest scoring sequence
fraction_by_recombination: fraction of sequences to generate by recombination of sequences from the previous generation
mutate_rate: probability of randomizing each residue when a sequence is mutated
boltz_temp: Temperature for Metropolis criterion
anchor_offset: Anchor offset for multistate packer aggregate function
checkpoint_prefix: prefix to add to the beginning of checkpoint file names
checkpoint_interval: frequency in number of sequences scored with which the checkpoint files are written
checkpoint_gz: compress the checkpoint files with gzip
checkpoint_rename: rename checkpoint files after the genetic algorithm completes, so that subsequent runs generate new output
scorefxn: Name of score function to use
task_operations: A comma-separated list of TaskOperations to use.
packer_palette: A previously-defined PackerPalette to use, which specifies the set of residue types with which to design (to be pruned with TaskOperations).

scripting_documentation/RosettaScripts/xsd/mover_DnaInterfaceMultiStateDesign_type