Autogenerated Tag Syntax Documentation:


Mover to generate backbones for de novo design

<FoldArchitect name="(&string;)" build_overlap="(&non_negative_integer;)"
        start_segments="(&string;)" stop_segments="(&string;)"
        iterations_per_phase="(&non_negative_integer;)" dump_pdbs="(&bool;)"
        debug="(&bool;)" >
    <DenovoArchitect pairings Tags ... />
    <RemodelLoopMoverPoseFolder scorefxn="(&string;)" />
    <RandomTorsionPoseFolder />
    <NullPoseFolder />
    <Perturber Tag ... />
    <PreFoldMovers name="(&string;)" >
        <Add mover="(&string;)" />
    </PreFoldMovers>
    <PostFoldMovers name="(&string;)" >
        <Add mover="(&string;)" />
    </PostFoldMovers>
    <Filters name="(&string;)" >
        <Add filter="(&string;)" />
    </Filters>
</FoldArchitect>
  • build_overlap: Overlap to use when building loops
  • start_segments: Set names of segments to include in the first build phase
  • stop_segments: Set names of segments to be included in the final build phase
  • iterations_per_phase: Number of iterations per build phase
  • dump_pdbs: Dump output to PDB files?
  • debug: Dump debugging PDBs?

"DenovoArchitect pairings Tags": Any of the DenovoArchitects

Subtag RemodelLoopMoverPoseFolder: Folds residues in a pose using RemodelLoopMover

  • scorefxn: Name of score function to use

"Perturber Tag": Any of the CompoundPerturbers

Subtag PreFoldMovers: Prefold protocol

Subtag Add:

  • mover: (REQUIRED) Mover to add to this step step

Subtag PostFoldMovers: Postfold protocol

Subtag Add:

  • mover: (REQUIRED) Mover to add to this step step

Subtag Filters: Filters to apply to generated backbones

Subtag Add:

  • filter: (REQUIRED) Filter to add