Autogenerated Tag Syntax Documentation:
GlycanDock performs protein-glycoligand local docking given a putative complex as input. All GlycanDockProtocol attributes are set to their default, and suggested values based on the results from the GlycanDock benchmark assessment.
<GlycanDockProtocol name="(&string;)" refine_only="(false &bool;)"
prepack_only="(false &bool;)" partners="(_ &string;)"
stage1_rotate_glycan_about_com="(false &bool;)"
stage1_perturb_glycan_com_trans_mag="(0.5 ℜ)"
stage1_perturb_glycan_com_rot_mag="(7.5 ℜ)"
stage1_torsion_uniform_pert_mag="(12.5 ℜ)"
n_repeats="(1 &non_negative_integer;)" mc_kt="(0.6 ℜ)"
n_rigid_body_rounds="(8 &non_negative_integer;)"
n_torsion_rounds="(8 &non_negative_integer;)"
stage2_trans_mag="(0.5 ℜ)" stage2_rot_mag="(7.5 ℜ)"
full_packing_frequency="(8 &non_negative_integer;)"
interface_packing_distance="(16.0 ℜ)" ramp_scorefxn="(true &bool;)"
watch_in_pymol="(false &bool;)" />