Autogenerated Tag Syntax Documentation:
Author: Jared Adolf-Bryfogle (jadolfbr@gmail.com) and Sebastian Raemish (raemish@scripps.edu).
Select residues that have a good electron density fit. (Or bad fit using the invert option). Uses internal density tools to do so.
Numbers and cutoffs match well with Coot's density fit analysis tool.
Zscore uses weighted sum of density, density-compared-to-neighbors, rama (where applicable) and cart_bonded to compute)
Correlation is same values used to calculate density scores. Zscore: eLife 2016, Dimaio
TIPS:
In order to do native comparisons, run the PerResidueDensityFit on the input (top of RS), and then use this selector on that.
<DensityFitResidueSelector name="(&string;)" invert="(false &bool;)"
cutoff="(-.5 ℜ)" sliding_window_size="(3 &positive_integer;)"
mixed_sliding_window="(false &bool;)" match_res="(false &bool;)"
use_selector_as_zscore_mask="(true &bool;)" den_fit_metric="(&string;)"
use_cache="(false &bool;)" prefix="(&string;)" suffix="(&string;)"
fail_on_missing_cache="(false &bool;)" residue_selector="(&string;)" />