scripting_documentation/RosettaScripts/xsd/rs_Neighborhood

Autogenerated Tag Syntax Documentation:

Authors: Robert Linder (rlindner@mpimf-heidelberg.mpg.de), Jared Adolf-Bryfogle (jadolfbr@gmail.com), and Gerard Daniel (gerardda@uw.edu) A Residue Selector that selects neighboring residues to a set of residues (focus). By default, includes this focus in the resulting selection.

References and author information for the Neighborhood residue selector:

NeighborhoodResidueSelector ResidueSelector's author(s): Robert Lindner, Natural Sciences and Mathematics, Ruperto-Carola University, Heidelberg, Germany [rlindner@mpimf-heidelberg.mpg.de] Jared Adolf-Bryfogle, Schief lab, Scripps Research Institute [jadolfbr@gmail.com] Gerard Daniel, Institue for Protein Design, University of Washington [gerardda@uw.edu]

<Neighborhood name="(&string;)" selector="(&string;)" resnums="(&string;)"
        distance="(&real;)" atom_names_for_distance_measure="(&string;)"
        include_focus_in_subset="(true &bool;)" >
    <Residue Selector Tag ... />
</Neighborhood>

selector: Focus to select around. The name of a previously declared residue selector or a logical expression of AND, NOT (!), OR, parentheses, and the names of previously declared residue selectors. Any capitalization of AND, NOT, and OR is accepted. An exclamation mark can be used instead of NOT. Boolean operators have their traditional priorities: NOT then AND then OR. For example, if selectors s1, s2, and s3 have been declared, you could write: 's1 or s2 and not s3' which would select a particular residue if that residue were selected by s1 or if it were selected by s2 but not by s3.
resnums: Focus to select around.
distance: Distance to measure neighbors. Default is 10A.
atom_names_for_distance_measure: A list of comma separated atom names, for each focus residue, the positions of which will be used for measuring distance to find neighbors.
include_focus_in_subset: Should the focus be included in the returning subset? Default True

"Residue Selector Tag": Any of the ResidueSelectors

scripting_documentation/RosettaScripts/xsd/rs_Neighborhood_type