Autogenerated Tag Syntax Documentation:


a selector for choosing parts of secondary structure

<SSElement name="(&string;)" selection="(&string;)" to_selection="(&string;)"
        chain="(&string;)"
        reassign_short_terminal_loop="(2 &non_negative_integer;)" />
  • selection: H=helix,L=Loop,S=Sheet,N=n_terminal,C=terminal can define only start
  • to_selection: H=helix,L=Loop,S=Sheet,N=n_terminal,C=terminal
  • chain: chain letter
  • reassign_short_terminal_loop: if terminal less than X residues loop is reassigned to neighboring SS element (default=2; 0=no reassignment).