scripting_documentation/RosettaScripts/xsd/to_DsspDesign

Autogenerated Tag Syntax Documentation:

Design residues with selected amino acids depending on the local secondary structure. The secondary structure at each residue is determined by DSSP (or read from a blueprint file).

<DsspDesign name="(&string;)" blueprint="(&string;)" pose_secstruct="(&string;)" >
    <Loop aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <Strand aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <Helix aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <HelixStart aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <HelixCapping aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <Nterm aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <Cterm aa="(&string;)" append="(&string;)" exclude="(&string;)" />
    <all aa="(&string;)" append="(&string;)" exclude="(&string;)" />
</DsspDesign>

blueprint: a blueprint file which specifies the secondary structure at each position
pose_secstruct: a secondary structure string that will be used as the pose secondary structure

Subtag Loop: allowed loop residues. default: ACDEFGHIKLMNPQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag Strand: allowed strand residues. default: DEFHIKLNQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag Helix: allowed helix residues. default: ADEFIKLNQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag HelixStart: allowed helix start residues. default: ADEFHIKLNPQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag HelixCapping: allowed helix capping residues. default: DNST

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag Nterm: allowed n terminal residues. default: ACDEFGHIKLMNPQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag Cterm: allowed c terminal residues. default: ACDEFGHIKLMNPQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

Subtag all: allowed residues for all secstruct tyes: ACDEFGHIKLMNPQRSTVWY

aa: define the set of residues allowed for the defined secondary structure type; the string is composed of one letter amino acid codes.
append: append the following residues to the set of allowed residues for the defined secondary structure type.
exclude: opposite of append.

scripting_documentation/RosettaScripts/xsd/to_DsspDesign_type