- w -

• water_adduct_hbond_score() : core::scoring::WaterAdductHBondPotential
• WaterAdductHBondEnergy() : core::scoring::methods::WaterAdductHBondEnergy
• WaterAdductHBondPotential() : core::scoring::WaterAdductHBondPotential
• WaterAdductIntraEnergy() : core::scoring::methods::WaterAdductIntraEnergy
• WaterBuilder() : core::scoring::methods::WaterBuilder
• WaterPackingInfo() : core::pack::rotamer_set::WaterPackingInfo
• waters() : core::scoring::methods::LKB_ResidueInfo
• WaterWeightGridSet() : core::scoring::geometric_solvation::WaterWeightGridSet
• wc_edge_paired() : core::scoring::rna::data::RNA_DMS_LowResolutionPotential
• weight() : core::chemical::Element , core::io::silent::SilentEnergy , core::scoring::AtomNeighbor , core::scoring::constraints::SequenceProfileConstraint , core::scoring::CSA , core::scoring::DC , core::scoring::func::TopOutFunc , core::scoring::hbonds::HBond , core::scoring::MinimizationEdge , core::scoring::MinimizationNode , core::scoring::packstat::PackingScore , core::scoring::RDC , core::scoring::RDC_Rohl , core::scoring::rna::data::RNA_Datum , core::scoring::SmallAtNb
• weight_func() : core::scoring::AtomNeighbor
• weight_type_from_name() : core::scoring::hbonds::HBondTypeManager
• weight_type_lookup() : core::scoring::hbonds::HBondDatabase
• weighted_atom_pair_energy() : core::scoring::vdwaals::VDWTrieEvaluator
• weighted_string_of() : core::scoring::EMapVector
• weights() : core::scoring::Energies , core::scoring::ScoreFunction
• well_depth() : core::scoring::func::SquareWell2Func , core::scoring::func::SquareWellFunc
• which_node() : core::pack::interaction_graph::EdgeBase
• whole_pose_context_enmeths_begin() : core::scoring::MinimizationGraph
• whole_pose_context_enmeths_end() : core::scoring::MinimizationGraph
• whole_structure_types() : core::scoring::ScoreFunction
• WholeStructureEnergy() : core::scoring::methods::WholeStructureEnergy
• WholeWholeEnergyInvoker() : core::scoring::etable::WholeWholeEnergyInvoker< Evaluator >
• width() : core::io::silent::SilentEnergy , core::sequence::SequenceProfile
• WildcardMatch() : core::scoring::sc::MolecularSurfaceCalculator
• wipe() : core::pack::interaction_graph::LinearMemEdge , core::pack::interaction_graph::SymmLinearMemEdge , core::pack::interaction_graph::SymmMinimalistEdge
• wipe_two_body_energies_for_node_state() : core::pack::interaction_graph::DoubleLazyEdge , core::pack::interaction_graph::LazyEdge
• within1bonds_sets_for_atom() : core::chemical::ResidueType
• within2bonds_sets_for_atom() : core::chemical::ResidueType
• working_res() : core::pose::full_model_info::FullModelInfo
• write() : core::chemical::ElectronConfiguration , core::chemical::Element , core::chemical::gasteiger::GasteigerAtomTypeData , core::grid::CartGrid< T > , core::io::serialization::BUFFER
• write_all() : core::io::raw_data::RawFileData , core::io::silent::SilentFileData
• write_apolar_hydrogens() : core::conformation::ResidueKinWriter
• write_atom_type_extra_parameters_table() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_extra_parameters_table_schema() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_properties_table() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_properties_table_schema() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_property_values_table_schema() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_set_to_database() : core::chemical::AtomTypeDatabaseIO
• write_atom_type_table() : core::chemical::AtomTypeDatabaseIO
• write_atom_types_table_schema() : core::chemical::AtomTypeDatabaseIO
• write_backbone_hydrogens() : core::conformation::ResidueKinWriter
• write_binary() : core::scoring::motif::XformScore
• write_binary_fa_dunbrack_libraries() : core::pack::dunbrack::RotamerLibrary
• write_binary_fa_dunbrack_libraries_02() : core::pack::dunbrack::RotamerLibrary
• write_binary_fa_dunbrack_libraries_10() : core::pack::dunbrack::RotamerLibrary
• write_circle_intersection_mask_to_kinemage() : core::pack::interaction_graph::InvRotamerDots
• write_comment() : core::io::silent::SilentFileData
• write_config() : core::scoring::PoissonBoltzmannPotential
• write_constraints() : core::scoring::constraints::ConstraintIO
• write_coords() : core::conformation::ConformationKinWriter
• write_data() : core::fragment::FragmentIO
• write_exposed_dots_to_kinemage() : core::pack::interaction_graph::InvRotamerDots
• write_hbond_evaluation_types_table_schema() : core::scoring::hbonds::HBondDatabase
• write_hbond_fade_interval_table_schema() : core::scoring::hbonds::HBondDatabase
• write_hbond_polynomial_1d_table_schema() : core::scoring::hbonds::HBondDatabase
• write_hydrogens() : core::conformation::ResidueKinWriter
• write_kin_header() : core::chemical::ResidueTypeKinWriter , core::conformation::ResidueKinWriter
• write_pdb_link_records() : core::io::pdb::FileDataOptions
• write_polar_hydrogens() : core::conformation::ResidueKinWriter
• write_pose() : core::import_pose::pose_stream::PoseOutputStream , core::io::raw_data::DecoyFileData , core::io::raw_data::ScoreFileData
• write_pqr() : core::scoring::PoissonBoltzmannPotential
• write_psipred_ss2() : core::fragment::SecondaryStructure
• write_rama_score_all() : core::scoring::Ramachandran2B , core::scoring::Ramachandran
• write_residue_type_atom_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_bond_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_chi_rotamer_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_chi_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_cut_bond_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_icoor_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_property_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_proton_chi_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_table_schema() : core::chemical::ResidueDatabaseIO
• write_residue_type_variant_type_table_schema() : core::chemical::ResidueDatabaseIO
• write_residuetype_to_database() : core::chemical::ResidueDatabaseIO
• write_restype() : core::chemical::ResidueTypeKinWriter
• write_rsd_coords() : core::conformation::ResidueKinWriter
• write_schema_to_db() : core::chemical::AtomTypeDatabaseIO , core::chemical::ResidueDatabaseIO
• write_score_function_method_options_table_schema() : core::scoring::methods::EnergyMethodOptions
• write_silent_struct() : core::conformation::symmetry::SymmetryInfo , core::io::silent::SilentFileData
• write_spanfile() : core::conformation::membrane::SpanningTopology
• write_struct() : core::io::raw_data::DecoyFileData , core::io::raw_data::ScoreFileData
• write_to_binary() : core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T > , core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T > , core::pack::dunbrack::RotamerLibrary , core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T > , core::pack::dunbrack::SingleResidueDunbrackLibrary , core::pack::dunbrack::SingleResiduePeptoidLibrary
• write_to_BRIX() : core::grid::CartGrid< T >
• write_to_compact_array() : core::pack::interaction_graph::DotSphere , core::pack::interaction_graph::RotamerDotsCache
• write_to_file() : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::CoarseSingleResidueLibrary , core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T > , core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T > , core::pack::dunbrack::RotamerLibrary , core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T > , core::pack::dunbrack::SingleLigandRotamerLibrary , core::pack::dunbrack::SingleResidueRotamerLibrary
• write_virtual_atoms() : core::conformation::ConformationKinWriter , core::conformation::ResidueKinWriter
• writeMAT() : core::scoring::electron_density::ElectronDensity
• writeMRC() : core::scoring::electron_density::ElectronDensity
• ws_methods_begin() : core::scoring::ScoreFunction
• ws_methods_end() : core::scoring::ScoreFunction
• wt_aa() : core::io::PositionDdGInfo::PositionDdGInfo
• wt_residue_for_node() : core::pack::interaction_graph::HPatchNode< V, E, G > , core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
• wt_seqpos_for_node() : core::pack::interaction_graph::HPatchNode< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >