- a -

• aa_ala : core::chemical
• aa_arg : core::chemical
• aa_asn : core::chemical
• aa_asp : core::chemical
• aa_b3a : core::chemical
• aa_b3c : core::chemical
• aa_b3cisACHC : core::chemical
• aa_b3cisACPC : core::chemical
• aa_b3cisACPrC : core::chemical
• aa_b3d : core::chemical
• aa_b3e : core::chemical
• aa_b3f : core::chemical
• aa_b3g : core::chemical
• aa_b3h : core::chemical
• aa_b3i : core::chemical
• aa_b3k : core::chemical
• aa_b3l : core::chemical
• aa_b3m : core::chemical
• aa_b3n : core::chemical
• aa_b3p : core::chemical
• aa_b3q : core::chemical
• aa_b3r : core::chemical
• aa_b3s : core::chemical
• aa_b3t : core::chemical
• aa_b3v : core::chemical
• aa_b3w : core::chemical
• aa_b3y : core::chemical
• aa_cmp : core::scoring
• aa_cys : core::chemical
• aa_dal : core::chemical
• aa_dan : core::chemical
• aa_dar : core::chemical
• aa_das : core::chemical
• aa_dcs : core::chemical
• aa_dgn : core::chemical
• aa_dgu : core::chemical
• aa_dhi : core::chemical
• aa_dil : core::chemical
• aa_dle : core::chemical
• aa_dly : core::chemical
• aa_dme : core::chemical
• aa_dph : core::chemical
• aa_dpr : core::chemical
• aa_dse : core::chemical
• aa_dth : core::chemical
• aa_dtr : core::chemical
• aa_dty : core::chemical
• aa_dva : core::chemical
• aa_gln : core::chemical
• aa_glu : core::chemical
• aa_gly : core::chemical
• aa_h2o : core::chemical
• aa_his : core::chemical
• aa_ile : core::chemical
• aa_leu : core::chemical
• aa_lys : core::chemical
• aa_met : core::chemical
• aa_phe : core::chemical
• aa_pro : core::chemical
• aa_ser : core::chemical
• aa_thr : core::chemical
• aa_trp : core::chemical
• aa_tyr : core::chemical
• aa_unk : core::chemical
• aa_unp : core::chemical
• aa_val : core::chemical
• aa_vrt : core::chemical
• abego : core::scoring
• above : core::sequence
• Ac : core::chemical::element
• Ag : core::chemical::element
• Al : core::chemical::element
• ALPHA : core::chemical::rna , core::scoring::dna
• ALREADY_SYMMETRIZED : core::pack::task
• Am : core::chemical::element
• angle_constraint : core::scoring
• ANTI : core::chemical::rna
• ANY_BASE_EDGE : core::chemical::rna
• ANY_CHI : core::chemical::rna
• ANY_PUCKER : core::chemical::rna
• ANY_TORSION : core::chemical::rna
• Ar : core::chemical::element
• AromaticBond : core::chemical
• As : core::chemical::element
• At : core::chemical::element
• atom_pair_constraint : core::scoring
• ATTEN_2 : core::scoring::sc
• ATTEN_6 : core::scoring::sc
• ATTEN_BLOCKER : core::scoring::sc
• ATTEN_BURIED_FLAGGED : core::scoring::sc
• Au : core::chemical::element
• AUTOMATIC : core::conformation