chemical Directory Reference

Directory dependency graph for chemical:

Directories
directory	carbohydrates
directory	gasteiger
directory	orbitals
directory	residue_properties
directory	rna
directory	sdf

Files
file	AA.cc
	translation between amino acid enum and string name/one letter char codes
file	AA.hh
file	Adduct.cc
	definition of residue adduct class
file	Adduct.fwd.hh
	declaration of class for adducts on residues
file	Adduct.hh
	declaration of implementation class for residue adducts
file	adduct_util.cc
file	adduct_util.hh
file	Atom.cc
	Method definitions for chemical::Atom.
file	Atom.fwd.hh
	Class declaration for chemical::Atom.
file	Atom.hh
	Class definitions for chemical::Atom.
file	AtomICoor.cc
	declaration of implementation class for abstract class Residue
file	AtomICoor.fwd.hh
	declaration of implementation class for abstract class Residue
file	AtomICoor.hh
	declaration of implementation class for abstract class Residue
file	AtomType.cc
	A class for defining atom parameters, known as atom_types.
file	AtomType.fwd.hh
file	AtomType.hh
	A class for defining atom parameters, known as atom_types.
file	atomtype_support.cc
file	atomtype_support.hh
file	AtomTypeDatabaseIO.cc
	Write chemical information associated with atom types to a database.
file	AtomTypeDatabaseIO.fwd.hh
file	AtomTypeDatabaseIO.hh
file	AtomTypeSet.cc
file	AtomTypeSet.fwd.hh
file	AtomTypeSet.hh
file	automorphism.cc
file	automorphism.hh
file	Bond.cc
file	Bond.fwd.hh
file	Bond.hh
file	bond_support.cc
	support functions for class Bond; functions that should not be included as part of the class.
file	bond_support.hh
	support functions for class Bond; functions that should not be included as part of the class.
file	ChemicalManager.cc
file	ChemicalManager.fwd.hh
	Chemical manager class header.
file	ChemicalManager.hh
file	ElectronConfiguration.cc
	The data for the BCL electron configuration.
file	ElectronConfiguration.fwd.hh
file	ElectronConfiguration.hh
	The data for the BCL electron configuration.
file	Element.cc
	The data for the element types.
file	Element.fwd.hh
file	Element.hh
	The data for the element types.
file	Elements.cc
file	Elements.hh
	All the elements known to mankind (me)...as of4/18/2014.
file	ElementSet.cc
file	ElementSet.fwd.hh
file	ElementSet.hh
file	icoor_support.cc
	external support for manipulating the ResidueType's icoor/ideal_xyz
file	icoor_support.hh
file	IdealBondLengthSet.cc
file	IdealBondLengthSet.fwd.hh
file	IdealBondLengthSet.hh
file	MMAtomType.cc
	Molecular mechanics atom type class.
file	MMAtomType.fwd.hh
file	MMAtomType.hh
	Molecular mechanics atom type class.
file	MMAtomTypeSet.cc
file	MMAtomTypeSet.fwd.hh
file	MMAtomTypeSet.hh
file	Orbital.cc
file	Orbital.fwd.hh
file	Orbital.hh
file	Patch.cc
	Implementation class for abstract class Residue.
file	Patch.fwd.hh
file	Patch.hh
file	PatchOperation.cc
	Polymorphic classes representing the contents of a residue-type patch file.
file	PatchOperation.fwd.hh
file	PatchOperation.hh
	Polymorphic classes representing the contents of a residue-type patch file.
file	ResConnID.cc
file	ResConnID.fwd.hh
file	ResConnID.hh
	Declaration of class to represent the chemical bond between two ResidueConnections from one conformation::Residue to another.
file	residue_io.cc
	helper methods for ResidueType input/output
file	residue_io.hh
file	residue_support.cc
	support functions for class residue; functions that should not be included as part of the class.
file	residue_support.hh
	support functions for class residue; functions that should not be included as part of the class.
file	ResidueConnection.cc
file	ResidueConnection.fwd.hh
	declaration of implementation class for abstract class Residue
file	ResidueConnection.hh
	Inter-residue chemical bond connection point class declaration.
file	ResidueDatabaseIO.cc
file	ResidueDatabaseIO.fwd.hh
file	ResidueDatabaseIO.hh
file	ResidueGraphTypes.cc
	Graph structure for ResidueType.
file	ResidueGraphTypes.hh
	Graph structure for ResidueType.
file	ResidueLoader.cc
	implementation of the Residue Loader
file	ResidueLoader.fwd.hh
	forward headers for the Residue Loader
file	ResidueLoader.hh
	headers for the Residue Loader
file	ResidueLoaderCreator.hh
file	ResidueLoaderOptions.cc
	forward headers for the Residue Loader Options
file	ResidueLoaderOptions.fwd.hh
	forward headers for the Residue Loader Options
file	ResidueLoaderOptions.hh
	forward headers for the Residue Loader Options
file	ResidueLoaderOptionsCreator.hh
file	ResidueProperties.cc
	Method definitions for ResidueProperties.
file	ResidueProperties.fwd.hh
	Forward declarations for ResidueProperties.
file	ResidueProperties.hh
	Declarations and simple accessor/mutator definitions for ResidueProperties.
file	ResidueSelector.cc
file	ResidueSelector.fwd.hh
file	ResidueSelector.hh
file	ResidueType.cc
	Method definitions for ResidueType.
file	ResidueType.fwd.hh
	declaration of implementation class for abstract class Residue
file	ResidueType.hh
	Method declarations and simple accessors/getters for ResidueType.
file	ResidueTypeKinWriter.cc
	Class to write kinemage-formatted output for Residue and chemical.
file	ResidueTypeKinWriter.fwd.hh
	Class to write kinemage-formatted output for ResidueType.
file	ResidueTypeKinWriter.hh
	Class to write kinemage-formatted output for ResidueType.
file	ResidueTypeSet.cc
	ResidueTypeSet class.
file	ResidueTypeSet.fwd.hh
file	ResidueTypeSet.hh
file	ring_conformer_io.cc
	Database input/output function definitions for ring-conformer-specific data.
file	ring_conformer_io.hh
	Database input/output function declarations for ring-conformer-specific data.
file	RingConformerSet.cc
	Method definitions for RingConformerSet.
file	RingConformerSet.fwd.hh
	Forward declarations for RingConformerSet.
file	RingConformerSet.hh
	Declarations and simple accessor/mutator definitions for RingConformerSet.
file	types.hh
	rosetta project type declarations
file	util.cc
	Utilities for modifying and utilizing Residues and other core::chemical classes.
file	util.hh
	Utilities for modifying and utilizing Residues and other core::chemical classes.