util.hh File Reference

protocols that are specific to docking low resolution More...

#include <protocols/docking/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <utility/vector1.fwd.hh>
#include <map>
#include <utility/sql_database/DatabaseSessionManager.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::docking

Functions
void	protocols::docking::setup_foldtree (Pose &pose, string const &partner_chainID, DockJumps &movable_jumps)
	Setup foldtree for across an interface specified by a string for the partner chains (using pdb_chain identification). The foldtree is set up such that the jump points are at the center of masses of the two partners. More...
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, std::string const &partner_chainID, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (core::pose::Pose &pose, core::Size interface_id, utility::sql_database::sessionOP db_session, DockJumps &movable_jumps)
	Sets up a docking fold tree based on looking up the interface in a database. More...
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, core::Size interface_id, utility::sql_database::sessionOP db_session, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (core::pose::Pose &pose, std::map< core::Size, utility::vector1< core::Size > > const &partner_to_chains, DockJumps &movable_jumps)
	Sets up a docking fold tree based on a map of which chains are part of which partner. More...
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, std::map< core::Size, utility::vector1< core::Size > > const &partner_to_chains, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (core::pose::Pose &pose, core::Size cutpoint, DockJumps &movable_jumps)
	Sets up a docking fold tree based on user-specified chains for the first and second partner. More...
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, core::Size cutpoint, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)

Detailed Description

protocols that are specific to docking low resolution

Detailed:

Author

Brian Weitzner