Rosetta Protocols
2015.09
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Namespace List
Here is a list of all namespaces with brief descriptions:
[detail level
1
2
3
4
5
]
►
N
devel
N
md
►
N
ObjexxFCL
Application level code for relax-type protocols
N
format
►
N
protocols
The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP
►
N
abinitio
N
abscript
N
analysis
N
anchored_design
►
N
antibody
N
clusters
N
constraints
N
design
N
antibody_legacy
N
backrub
►
N
boinc
N
watchdog
N
branch_angle
►
N
canonical_sampling
Algorithms for rigorously sampling native state ensembles. See disclaimer in detailed description
N
mc_convergence_checks
N
cartesian
N
checkpoint
N
cluster
N
coarse_rna
►
N
comparative_modeling
N
features
N
constraints_additional
N
contact_map
N
cryst
N
cyclic_peptide
N
ddg
N
ddG
►
N
denovo_design
N
filters
N
design_opt
N
dna
►
N
docking
N
membrane
N
stateless
N
domain_assembly
N
electron_density
N
elscripts
►
N
environment
N
claims
►
N
enzdes
N
enzutil
N
evaluation
N
farna
►
N
features
N
helixAssembly
N
RelevantResiduesMode
N
strand_assembly
N
fibril
N
filters
►
N
fldsgn
N
filters
►
N
potentials
N
sspot
N
topology
►
N
flexpack
N
annealer
N
interaction_graph
N
rotamer_set
N
flexpep_docking
N
floppy_tail
N
flxbb
►
N
forge
►
N
build
N
BuildInstructionState
N
SegmentInsertConnectionScheme
►
N
components
N
VLB_VallMemoryUsage
N
constraints
N
methods
N
remodel
►
N
frag_picker
N
nonlocal
N
quota
N
scores
N
frags
►
N
generalized_kinematic_closure
N
filter
N
perturber
N
selector
N
genetic_algorithm
N
geometry
►
N
grafting
N
simple_movers
►
N
helical_bundle
N
parameters
N
helix_capper
►
N
hotspot_hashing
N
movers
N
hybridization
N
idealize
►
N
indexed_structure_store
N
filters
N
init
N
inputter
N
interface
►
N
jd2
N
archive
N
JobInputterInputSource
N
parser
N
jobdist
N
jumping
►
N
kinematic_closure
Implementation of the kinematic closure algorithm for sampling protein backbone conformations
N
perturbers
Algorithms for sampling new backbone torsions
N
pivot_pickers
Algorithms for choosing pivot residues
N
solution_pickers
Algorithms for picking one of the 0 to 16 solutions generated by kinematic closure
N
kinmatch
►
N
ligand_docking
N
ligand_options
N
rdf
N
scoring_grid
N
loop_build
►
N
loop_modeling
Framework for loop structure prediction
N
refiners
Algorithms for lowering loop region scores during sampling
N
samplers
Algorithms for generating new loop conformations
N
utilities
Generally useful loop-sampling meta-algorithms
N
loophash
►
N
loops
►
N
loop_closure
N
ccd
N
kinematic_closure
►
N
loop_mover
N
perturb
N
refine
N
loops_definers
N
make_rot_lib
►
N
match
N
downstream
N
output
N
upstream
N
matdes
N
md
N
medal
►
N
membrane
N
geometry
N
io
N
symmetry
N
visualize
N
metal_interface
►
N
motif_grafting
...that lives inside of
motif_grafting
..
N
movers
...and belongs to the movers class..
N
motifs
N
moves
N
mpi_refinement
N
multistate_design
►
N
ncbb
N
oop
N
neighbor
N
noesy_assign
N
nonlocal
N
normalmode
N
optimize_weights
N
outputter
N
pack_daemon
N
pb_potential
N
pmut_scan
N
pockets
N
pose_reporters
N
pose_selectors
►
N
protein_interface_design
N
filters
N
movers
►
N
qsar
N
scoring_grid
N
rbsegment_relax
►
N
relax
N
membrane
N
rigid
N
rosetta_scripts
N
rotamer_recovery
N
RotamerDump
N
rpc
N
sasa_scores
►
N
scoring
►
N
methods
N
pcs
N
pcs2
N
pcsTs1
N
pcsTs2
N
pcsTs3
N
pcsTs4
N
saxs
N
seeded_abinitio
►
N
sic_dock
N
scores
N
simple_filters
►
N
simple_moves
N
asym_fold_and_dock
N
bin_transitions
N
chiral
N
hbs
N
oop
N
rational_mc
N
sidechain_moves
N
symmetry
N
sparta
N
ss_prediction
N
star
►
N
stepwise
►
N
legacy
►
N
modeler
N
protein
N
rna
N
screener
►
N
modeler
N
align
N
movemap
N
options
N
packer
N
polar_hydrogens
N
precomputed
►
N
protein
N
checker
N
loop_close
►
N
rna
N
bulge
N
checker
N
helix
N
o2prime
N
phosphate
N
rigid_body
N
sugar
N
working_parameters
►
N
monte_carlo
N
mover
N
options
N
rna
N
options
►
N
sampler
N
copy_dofs
N
input_streams
N
protein
N
rigid_body
N
rna
N
screener
N
screener
N
setup
N
surface_docking
►
N
symmetric_docking
N
membrane
►
N
toolbox
N
match_enzdes_util
N
pose_manipulation
N
pose_metric_calculators
N
rigid_body
N
rotamer_set_operations
N
sample_around
N
task_operations
►
N
topology_broker
N
claims
N
weights
N
trajectory
N
ub_e2c
N
unfolded_state_energy_calculator
►
N
viewer
N
graphics_states_param
N
vip
N
wum
N
wum2
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