protocols::simple_moves Namespace Reference

Namespaces
	asym_fold_and_dock
	bin_transitions
	chiral
	hbs
	oop
	rational_mc
	sidechain_moves
	symmetry

Classes
class	AddCavitiesMover
class	AddChainMover
class	AddChainMoverCreator
class	AddConstraintsToCurrentConformationMover
class	AddConstraintsToCurrentConformationMoverCreator
class	AddJobPairData
	Add an arbitrary piece of data to the current Job, which will be output in the silent file, database, etc. This is useful for adding metadata to keep track of data generated using multiple experimental conditions. Currently ONLY RosettaScript interface supported. More...
class	AddJobPairDataCreator
class	AlignChainMover
	Align a chain in the working pose to a chain. CA superposition. More...
class	AlignChainMoverCreator
class	BackboneMover
	BackboneMover class has elements of the MC temperature to do repetitions of bb moves (small, shear, wobble, etc.). More...
class	BBConRotMover
class	BBG8T3AMover
	a particular gaussian mover from the original paper More...
class	BBGaussianMover
	the basic class for implementing Gaussian Perturbation of bb More...
class	BBGaussianMoverCreator
class	BoltzmannRotamerMover
class	BoltzmannRotamerMoverCreator
class	ChainGroupDiscriminator
class	ChainSplitMover
	ChainSplitMover splits a pose into two chains given a cutpoint. This may be necessary for evaluating a domain interface using classes such as the InterfaceAnalyzerMover. More...
class	ChangeAndResetFoldTreeMover
	Basic mover used primarily for setting up atomic protocols, especially in generator functions. More...
class	ChangeAndResetFoldTreeMoverCreator
class	ClassicFragmentMover
	A FragmentMover that applies uniform sampling of fragments. More...
class	ClearConstraintsMover
class	ClearConstraintsMoverCreator
class	CombinePoseMover
class	ConsensusDesignMover
	This mover will modify a given task according to a sequence profile and then call the PackRotamersMover. At every position that is designable in the task, AAs that have a probability > min_aa_probability_ and higher than the native in the sequence profile will be allowed. More...
class	ConsensusDesignMoverCreator
class	ConstrainToIdealMover
class	ConstraintSetMover
class	ConstraintSetMoverCreator
class	ContingentAcceptMover
class	ContingentAcceptMoverCreator
class	CopyDofMover
class	CoupledMover
class	CoupledMoverCreator
class	CutChainMover
	simple mover that sperates Fv from Fl into two seperate chains More...
class	CutChainMoverCreator
class	CyclizationMover
class	ddG
class	ddGCreator
class	DesignRepackMover
	a pure virtual base class for movers which redesign and repack the interface More...
class	DisulfideInsertionMover
class	DME_FilterMover
class	DOFHistogramRecorder
class	DumpPdb
	what you think this can now be assimilated into DumpPdbMover More...
class	DumpPdbCreator
class	EnergyCutRotamerTrialsMinMover
	Wrapper for Rotamer Trials with Minimization, which modifies only rotamers whose energy changed by a given constant. More...
class	EnergyCutRotamerTrialsMover
class	ExtendedPoseMover
class	ExtendedPoseMoverCreator
class	FavorSequenceProfile
class	FavorSequenceProfileCreator
class	FavorSymmetricSequence
class	FavorSymmetricSequenceCreator
class	FindConsensusSequence
class	FindConsensusSequenceCreator
class	ForceDisulfidesMover
	simple mover that fixes disulfides according to a defined list and then simultaneously repacks within 6A shells around each affected cystein residue. More...
class	ForceDisulfidesMoverCreator
class	FragmentCost
class	FragmentMover
	abstract base class for FragmentMovers More...
class	GenericMonteCarloMover
class	GenericMonteCarloMoverCreator
class	GreenPacker
class	GroupDiscriminator
	Interface class used to break a pose down into a set of component "groups" where intra-group rotamer-pair energies are preserved between calls to the GreenPacker. E.g. in rigid-body docking between two proteins, chains 1 and 2 define groups 1 and 2. In rigid-body docking between two domains of the same chain, those residues upstream of jump 1 define group 1, and those downstream of jump 1 define group 2. In loop modelling, the static background is group 1, and the loop itself is group 0, since loop residues will have their bb dofs change regularly between repackings. More...
class	GunnCost
struct	GunnTuple
class	IonizableResidue
class	LoadPDBMover
class	LoadPDBMoverCreator
class	LoadUnboundRotMover
class	LoadUnboundRotMoverCreator
class	LoggedFragmentMover
class	MakePolyXMover
class	MakePolyXMoverCreator
class	MembraneTopology
	A mover to change one torsion angle. More...
class	MembraneTopologyCreator
class	MinimalRotamer
class	MinMover
	A protocols::moves::Mover that minimizes a Pose to a local energy minimum by performing energy minimization of a ScoreFunction over the allowable degrees of freedom, defined by a MoveMap. The minimization type, minimization tolerance, and various other options can be also be set. More...
class	MinMoverCreator
class	MinPackMover
	a mover that packs and minimizes the side-chains. It uses a ScoreFunction for packing and either a PackerTask, or a TaskFactory that generates a PackerTask for instructions on what rotamer sets are allowed at each residue position during packing. More...
class	MinPackMoverCreator
class	MissingDensityToJumpMover
class	ModifyVariantTypeMover
	Adds variant types to selected residues. More...
class	ModifyVariantTypeMoverCreator
class	MonteCarloRecover
class	MonteCarloRecoverCreator
class	MonteCarloReset
class	MonteCarloResetCreator
class	MonteCarloTest
class	MonteCarloTestCreator
class	MSDMover
class	MSDMoverCreator
class	MutateResidue
	A mover to mutate a single residue. More...
class	MutateResidueCreator
class	O2M_MutateMover
class	PackRotamersMover
	A protocols::moves::Mover that packs the side-chains using a rotamer library It uses a ScoreFunction for packing and a PackerTask, or a TaskFactory that generates a PackerTask, for instructions on what rotamer sets are allowed at each residue position during packing. More...
class	PackRotamersMoverCreator
class	PackRotamersMoverLazy
	a mover that packs the side-chains using a rotamer library in a lazy fashion. More...
class	PackRotamersMoverLazyCreator
class	PDBReloadMover
class	PDBReloadMoverCreator
class	PeptideStapleMover
class	ProlineFixMover
class	PSSM2BfactorMover
class	PSSM2BfactorMoverCreator
class	RandomOmegaFlipMover
class	RandomOmegaFlipMoverCreator
class	RandomTorsionMover
class	RandomTorsionMoverCreator
class	RepackSidechainsMover
	A protocols::moves::Mover that packs the side-chains (very similar to pack_missing_sidechains() More...
class	RepackSidechainsMoverCreator
class	RepeatPropagationMover
class	RepeatPropagationMoverCreator
class	ReportEffectivePKA
	scale density map intensities to match a pose's More...
class	ReportEffectivePKACreator
class	RepulsiveOnlyMover
	this mover replace designated residues with glycines, and then assigns a "REPLONLY" residue type to those glycines. Those "REPLONLY" residues will make only repulsive contributions to the overall energy. More...
class	ResetBaselineMover
class	ResetBaselineMoverCreator
class	ResidueTypeConstraintMover
class	ResidueTypeConstraintMoverCreator
class	ResTypeFragmentMover
class	ReturnSidechainMover
class	RingConformationMover
class	RotamerizeMover
	a mover that replaces the repackable parts - sidechains, bases, etc. - based purely on geometric similarity to the starting structure. The purpose is to generate the best case output of a repacking calculation as a positive control for benchmarking and parameter fitting. Thus, the soft rep potential was originally derived as the score function that gave the best fit between repacked and rotamerized structures for a large test set. More...
class	RotamerTrialsMinMover
class	RotamerTrialsMinMoverCreator
class	RotamerTrialsMover
class	RotamerTrialsMoverCreator
class	SaneMinMover
class	SaneMinMoverCreator
class	ScoreMover
class	ScoreMoverCreator
class	SequenceProfileMover
class	SequenceProfileMoverCreator
class	SetReturningPackRotamersMover
class	SetTorsion
	A mover to change one torsion angle. More...
class	SetTorsionCreator
class	ShakeStructureMover
class	ShearMover
	A mover that perturbs the phi of residue i and the psi of residue i-1 such that they create a 'shearing' effect, minimizing the downstream consequences of this torsional perturbation. The final torsion angle is subject to a metropolis criterion using the rama score to ensure that only favorable backbone torsion angles are being selected. The number of perturbations, and the magnitude of perturbations, and the temperature in the rama check, can all be modified. More...
class	ShearMoverCreator
class	ShortBackrubMover
class	ShortBackrubMoverCreator
class	SmallMover
	A mover that makes independent random perturbations of the phi and psi torsion angles of residue i. It selects residue i at random among movable residues (set by its MoveMap), and the final torsion angle is subject to a metropolis criterion using the rama score to ensure that only favorable backbone torsion angles are being selected. The number of perturbations, and the magnitude of perturbations, and the temperature in the rama check, can all be modified. More...
class	SmallMoverCreator
class	SmoothFragmentMover
class	SmoothSymmetricFragmentMover
	A SymmetricFragmentMover that applies uniform sampling of fragments. More...
class	SuperimposeMover
	Superimpose pose onto reference pose. Default CA only. All residues. Optionally set to superimpose regions or backbone only (N, C, CA, O) More...
class	SuperimposeMoverCreator
class	SwitchChainOrderMover
class	SwitchChainOrderMoverCreator
class	SwitchResidueTypeSetMover
	A mover that switches a pose between residue type sets (e.g. centroid and fullatom) More...
class	SwitchResidueTypeSetMoverCreator
class	SymmetricFragmentMover
	A SymmetricFragmentMover that applies uniform sampling of fragments. More...
class	TailsScoreMover
class	TaskAwareMinMover
class	TaskAwareMinMoverCreator
class	TorsionDOFMover
	TODO: De-duplicate shared code from RotateJumpAxisMover (angle picking code) More...
class	TorsionSetMover
class	Tumble
class	TumbleCreator
class	UniformRotationMover
	Uniform Rotation Mover. More...
class	UniformTranslationMover
	Uniform Translation Mover. More...
class	UserDefinedGroupDiscriminator
class	VirtualRootMover
class	VirtualRootMoverCreator
class	WobbleMover
	A protocols::moves::Mover class for a classic-wobble analog: a smooth move followed by ccd closure. More...

Typedefs
typedef utility::pointer::shared_ptr < AddChainMover >	AddChainMoverOP
typedef utility::pointer::shared_ptr < AddChainMover const >	AddChainMoverCOP
typedef utility::pointer::shared_ptr < AddJobPairData >	AddJobPairDataOP
typedef utility::pointer::shared_ptr < AddJobPairData const >	AddJobPairDataCOP
typedef utility::pointer::shared_ptr < AlignChainMover >	AlignChainMoverOP
typedef utility::pointer::shared_ptr < AlignChainMover const >	AlignChainMoverCOP
typedef utility::pointer::shared_ptr < BackboneMover >	BackboneMoverOP
typedef utility::pointer::shared_ptr < BackboneMover const >	BackboneMoverCOP
typedef utility::pointer::shared_ptr < SmallMover >	SmallMoverOP
typedef utility::pointer::shared_ptr < SmallMover const >	SmallMoverCOP
typedef utility::pointer::shared_ptr < ShearMover >	ShearMoverOP
typedef utility::pointer::shared_ptr < ShearMover const >	ShearMoverCOP
typedef utility::pointer::shared_ptr < BBConRotMover >	BBConRotMoverOP
typedef utility::pointer::shared_ptr < BBConRotMover const >	BBConRotMoverCOP
typedef utility::pointer::shared_ptr < BBGaussianMover >	BBGaussianMoverOP
typedef utility::pointer::shared_ptr < BBGaussianMover const >	BBGaussianMoverCOP
typedef utility::pointer::shared_ptr < BBG8T3AMover >	BBG8T3AMoverOP
typedef utility::pointer::shared_ptr < BBG8T3AMover const >	BBG8T3AMoverCOP
typedef utility::pointer::shared_ptr < BoltzmannRotamerMover >	BoltzmannRotamerMoverOP
typedef utility::pointer::shared_ptr < BoltzmannRotamerMover const >	BoltzmannRotamerMoverCOP
typedef utility::pointer::shared_ptr < ChainSplitMover >	ChainSplitMoverOP
typedef utility::pointer::shared_ptr < ChainSplitMover const >	ChainSplitMoverCOP
typedef utility::pointer::shared_ptr < ChangeAndResetFoldTreeMover >	ChangeAndResetFoldTreeMoverOP
typedef utility::pointer::shared_ptr < ChangeAndResetFoldTreeMover const >	ChangeAndResetFoldTreeMoverCOP
typedef utility::pointer::shared_ptr < CombinePoseMover >	CombinePoseMoverOP
typedef utility::pointer::shared_ptr < CombinePoseMover const >	CombinePoseMoverCOP
typedef utility::pointer::shared_ptr < ConsensusDesignMover >	ConsensusDesignMoverOP
typedef utility::pointer::shared_ptr < ConstrainToIdealMover >	ConstrainToIdealMoverOP
typedef utility::pointer::shared_ptr < ConstrainToIdealMover const >	ConstrainToIdealMoverCOP
typedef utility::pointer::shared_ptr < ConstraintSetMover >	ConstraintSetMoverOP
typedef utility::pointer::shared_ptr < ConstraintSetMover const >	ConstraintSetMoverCOP
typedef utility::pointer::shared_ptr < ContingentAcceptMover >	ContingentAcceptMoverOP
typedef utility::pointer::shared_ptr < ContingentAcceptMover const >	ContingentAcceptMoverCOP
typedef utility::pointer::shared_ptr < CopyDofMover >	CopyDofMoverOP
typedef utility::pointer::shared_ptr < CopyDofMover const >	CopyDofMoverCOP
typedef utility::pointer::shared_ptr < CoupledMover >	CoupledMoverOP
typedef utility::pointer::shared_ptr < CoupledMover const >	CoupledMoverCOP
typedef utility::pointer::shared_ptr < CutChainMover >	CutChainMoverOP
typedef utility::pointer::shared_ptr < CutChainMover const >	CutChainMoverCOP
typedef utility::pointer::shared_ptr < CyclizationMover >	CyclizationMoverOP
typedef utility::pointer::shared_ptr < CyclizationMover const >	CyclizationMoverCOP
typedef utility::pointer::shared_ptr < ddG >	ddGOP
typedef utility::pointer::shared_ptr < ddG const >	ddGCOP
typedef utility::pointer::shared_ptr < DesignRepackMover >	DesignRepackMoverOP
typedef utility::pointer::shared_ptr < DesignRepackMover const >	DesignRepackMoverCOP
typedef utility::pointer::shared_ptr < DisulfideInsertionMover >	DisulfideInsertionMoverOP
typedef utility::pointer::shared_ptr < DisulfideInsertionMover const >	DisulfideInsertionMoverCOP
typedef utility::pointer::shared_ptr < ExtendedPoseMover >	ExtendedPoseMoverOP
typedef utility::pointer::shared_ptr < ExtendedPoseMover const >	ExtendedPoseMoverCOP
typedef utility::pointer::shared_ptr < FavorSymmetricSequence >	FavorSymmetricSequenceOP
typedef utility::pointer::shared_ptr < FavorSymmetricSequence const >	FavorSymmetricSequenceCOP
typedef utility::pointer::shared_ptr < FindConsensusSequence >	FindConsensusSequenceOP
typedef utility::pointer::shared_ptr < FindConsensusSequence const >	FindConsensusSequenceCOP
typedef utility::pointer::shared_ptr < ForceDisulfidesMover >	ForceDisulfideMoverOP
typedef utility::pointer::shared_ptr < ForceDisulfidesMover const >	ForceDisulfideMoverCOP
typedef utility::pointer::shared_ptr < FragmentMover >	FragmentMoverOP
typedef utility::pointer::shared_ptr < FragmentMover const >	FragmentMoverCOP
typedef utility::pointer::shared_ptr < ClassicFragmentMover >	ClassicFragmentMoverOP
typedef utility::pointer::shared_ptr < ClassicFragmentMover const >	ClassicFragmentMoverCOP
typedef utility::pointer::shared_ptr < GenericMonteCarloMover >	GenericMonteCarloMoverOP
typedef utility::pointer::shared_ptr < GenericMonteCarloMover const >	GenericMonteCarloMoverCOP
typedef boost::function< bool(core::Size, core::Size, const core::pose::Pose &, core::scoring::ScoreFunctionOP)>	GenericMonteCarloMoverTrigger
	Trigger API definition. More...
typedef utility::pointer::shared_ptr < MinimalRotamer >	MinimalRotamerOP
typedef utility::pointer::shared_ptr < MinimalRotamer const >	MinimalRotamerCOP
typedef utility::pointer::shared_ptr < GroupDiscriminator >	GroupDiscriminatorOP
typedef utility::pointer::shared_ptr < GroupDiscriminator const >	GroupDiscriminatorCOP
typedef utility::pointer::shared_ptr < UserDefinedGroupDiscriminator >	UserDefinedGroupDiscriminatorOP
typedef utility::pointer::shared_ptr < GreenPacker >	GreenPackerOP
typedef utility::pointer::shared_ptr < GreenPacker const >	GreenPackerCOP
typedef utility::pointer::shared_ptr < LoadPDBMover >	LoadPDBMoverOP
typedef utility::pointer::shared_ptr < LoadPDBMover const >	LoadPDBMoverCOP
typedef utility::pointer::shared_ptr < LoadUnboundRotMover >	LoadUnboundRotMoverOP
typedef utility::pointer::shared_ptr < LoadUnboundRotMover const >	LoadUnboundRotMoverCOP
typedef utility::pointer::shared_ptr < MakePolyXMover >	MakePolyXMoverOP
typedef utility::pointer::shared_ptr < MembraneTopology >	MembraneTopologyOP
typedef utility::pointer::shared_ptr < MembraneTopology const >	MembraneTopologyCOP
typedef utility::pointer::shared_ptr < MinMover >	MinMoverOP
typedef utility::pointer::shared_ptr < MinMover const >	MinMoverCOP
typedef utility::pointer::shared_ptr < MinPackMover >	MinPackMoverOP
typedef utility::pointer::shared_ptr < MinPackMover const >	MinPackMoverCOP
typedef utility::pointer::shared_ptr < MissingDensityToJumpMover >	MissingDensityToJumpMoverOP
typedef utility::pointer::shared_ptr < MissingDensityToJumpMover const >	MissingDensityToJumpMoverCOP
typedef utility::pointer::shared_ptr < ModifyVariantTypeMover >	ModifyVariantTypeMoverOP
typedef utility::pointer::shared_ptr < ModifyVariantTypeMover const >	ModifyVariantTypeMoverCOP
typedef utility::pointer::shared_ptr < MonteCarloRecover >	MonteCarloRecoverOP
typedef utility::pointer::shared_ptr < MonteCarloRecover const >	MonteCarloRecoverCOP
typedef utility::pointer::shared_ptr < MonteCarloReset >	MonteCarloResetOP
typedef utility::pointer::shared_ptr < MonteCarloReset const >	MonteCarloResetCOP
typedef utility::pointer::shared_ptr < MonteCarloTest >	MonteCarloTestOP
typedef utility::pointer::shared_ptr < MonteCarloTest const >	MonteCarloTestCOP
typedef utility::pointer::shared_ptr < MSDMover >	MSDMoverOP
typedef utility::pointer::shared_ptr < MSDMover const >	MSDMoverCOP
typedef utility::pointer::shared_ptr < MutateResidue >	MutateResidueOP
typedef utility::pointer::shared_ptr < MutateResidue const >	MutateResidueCOP
typedef boost::shared_ptr < O2M_MutateMover >	O2M_MutateMoverSP
typedef utility::pointer::shared_ptr < PackRotamersMover >	PackRotamersMoverOP
typedef utility::pointer::shared_ptr < PackRotamersMover const >	PackRotamersMoverCOP
typedef utility::pointer::shared_ptr < PackRotamersMoverLazy >	PackRotamersMoverLazyOP
typedef utility::pointer::shared_ptr < PackRotamersMoverLazy const >	PackRotamersMoverLazyCOP
typedef utility::pointer::shared_ptr < PDBReloadMover >	PDBReloadMoverOP
typedef utility::pointer::shared_ptr < PDBReloadMover const >	PDBReloadMoverCOP
typedef utility::pointer::shared_ptr < PeptideStapleMover >	PeptideStapleMoverOP
typedef utility::pointer::shared_ptr < PeptideStapleMover const >	PeptideStapleMoverCOP
typedef utility::pointer::shared_ptr < ProlineFixMover >	ProlineFixMoverOP
typedef utility::pointer::shared_ptr < ProlineFixMover const >	ProlineFixMoverCOP
typedef utility::pointer::shared_ptr < PSSM2BfactorMover >	PSSM2BfactorMoverOP
typedef utility::pointer::shared_ptr < PSSM2BfactorMover const >	PSSM2BfactorMoverCOP
typedef utility::pointer::shared_ptr < RandomOmegaFlipMover >	RandomOmegaFlipMoverOP
typedef utility::pointer::shared_ptr < RandomOmegaFlipMover const >	RandomOmegaFlipMoverCOP
typedef utility::pointer::shared_ptr < RandomTorsionMover >	RandomTorsionMoverOP
typedef utility::pointer::shared_ptr < RandomTorsionMover const >	RandomTorsionMoverCOP
typedef utility::pointer::shared_ptr < RepackSidechainsMover >	RepackSidechainsMoverOP
typedef utility::pointer::shared_ptr < RepackSidechainsMover const >	RepackSidechainsMoverCOP
typedef utility::pointer::shared_ptr < RepeatPropagationMover >	RepeatPropagationMoverOP
typedef utility::pointer::shared_ptr < RepeatPropagationMover const >	RepeatPropagationMoverCOP
typedef utility::pointer::shared_ptr < RepulsiveOnlyMover >	RepulsiveOnlyMoverOP
typedef utility::pointer::shared_ptr < RepulsiveOnlyMover const >	RepulsiveOnlyMoverCOP
typedef utility::pointer::shared_ptr < ResetBaselineMover >	ResetBaselineMoverOP
typedef utility::pointer::shared_ptr < ResetBaselineMover const >	ResetBaselineMoverCOP
typedef utility::pointer::shared_ptr < ResidueTypeConstraintMover >	ResidueTypeConstraintMoverOP
typedef utility::pointer::shared_ptr < ResidueTypeConstraintMover const >	ResidueTypeConstraintMoverCOP
typedef utility::pointer::shared_ptr < ResTypeFragmentMover >	ResTypeFragmentMoverOP
typedef utility::pointer::shared_ptr < ResTypeFragmentMover const >	ResTypeFragmentMoverCOP
typedef utility::pointer::shared_ptr < ReturnSidechainMover >	ReturnSidechainMoverOP
typedef utility::pointer::shared_ptr < ReturnSidechainMover const >	ReturnSidechainMoverCOP
typedef utility::pointer::shared_ptr < RingConformationMover >	RingConformationMoverOP
typedef utility::pointer::shared_ptr < RingConformationMover const >	RingConformationMoverCOP
typedef utility::pointer::shared_ptr < RotamerizeMover >	RotamerizeMoverOP
typedef utility::pointer::shared_ptr < RotamerizeMover const >	RotamerizeMoverCOP
typedef utility::pointer::shared_ptr < RotamerTrialsMinMover >	RotamerTrialsMinMoverOP
typedef utility::pointer::shared_ptr < RotamerTrialsMinMover const >	RotamerTrialsMinMoverCOP
typedef utility::pointer::shared_ptr < EnergyCutRotamerTrialsMinMover >	EnergyCutRotamerTrialsMinMoverOP
typedef utility::pointer::shared_ptr < EnergyCutRotamerTrialsMinMover const >	EnergyCutRotamerTrialsMinMoverCOP
typedef utility::pointer::shared_ptr < RotamerTrialsMover >	RotamerTrialsMoverOP
typedef utility::pointer::shared_ptr < RotamerTrialsMover const >	RotamerTrialsMoverCOP
typedef utility::pointer::shared_ptr < EnergyCutRotamerTrialsMover >	EnergyCutRotamerTrialsMoverOP
typedef utility::pointer::shared_ptr < EnergyCutRotamerTrialsMover const >	EnergyCutRotamerTrialsMoverCOP
typedef utility::pointer::shared_ptr < SaneMinMover >	SaneMinMoverOP
typedef utility::pointer::shared_ptr < SaneMinMover const >	SaneMinMoverCOP
typedef utility::pointer::shared_ptr < ScoreMover >	ScoreMoverOP
typedef utility::pointer::shared_ptr < ScoreMover const >	ScoreMoverCOP
typedef utility::pointer::shared_ptr < SequenceProfileMover >	SequenceProfileMoverOP
typedef utility::pointer::shared_ptr < SequenceProfileMover const >	SequenceProfileMoverCOP
typedef utility::pointer::shared_ptr < SetReturningPackRotamersMover >	SetReturningPackRotamersMoverOP
typedef utility::pointer::shared_ptr < SetReturningPackRotamersMover const >	SetReturningPackRotamersMoverCOP
typedef utility::pointer::shared_ptr < SetTorsion >	SetTorsionOP
typedef utility::pointer::shared_ptr < SetTorsion const >	SetTorsionCOP
typedef utility::pointer::shared_ptr < ShakeStructureMover >	ShakeStructureMoverOP
typedef utility::pointer::shared_ptr < ShakeStructureMover const >	ShakeStructureMoverCOP
typedef utility::pointer::shared_ptr < ShortBackrubMover >	ShortBackrubMoverOP
typedef utility::pointer::shared_ptr < ShortBackrubMover const >	ShortBackrubMoverCOP
typedef utility::pointer::shared_ptr < SmoothFragmentMover >	SmoothFragmentMoverOP
typedef utility::pointer::shared_ptr < SmoothFragmentMover const >	SmoothFragmentMoverCOP
typedef utility::pointer::shared_ptr < FragmentCost >	FragmentCostOP
typedef utility::pointer::shared_ptr < FragmentCost const >	FragmentCostCOP
typedef utility::vector1 < core::Real >	ScoreList
typedef utility::pointer::shared_ptr < SuperimposeMover >	SuperimposeMoverOP
typedef utility::pointer::shared_ptr < SuperimposeMover const >	SuperimposeMoverCOP
typedef utility::pointer::shared_ptr < SwitchChainOrderMover >	SwitchChainOrderMoverOP
typedef utility::pointer::shared_ptr < SwitchChainOrderMover const >	SwitchChainOrderMoverCOP
typedef utility::pointer::shared_ptr < SwitchResidueTypeSetMover >	SwitchResidueTypeSetMoverOP
typedef utility::pointer::shared_ptr < SwitchResidueTypeSetMover const >	SwitchResidueTypeSetMoverCOP
typedef utility::pointer::shared_ptr < SymmetricFragmentMover >	SymmetricFragmentMoverOP
typedef utility::pointer::shared_ptr < SymmetricFragmentMover const >	SymmetricFragmentMoverCOP
typedef utility::pointer::shared_ptr < TaskAwareMinMover >	TaskAwareMinMoverOP
typedef utility::pointer::shared_ptr < TaskAwareMinMover const >	TaskAwareMinMoverCOP
typedef utility::pointer::shared_ptr < TorsionDOFMover >	TorsionDOFMoverOP
typedef utility::pointer::shared_ptr < TorsionDOFMover const >	TorsionDOFMoverCOP
typedef utility::pointer::shared_ptr < TorsionSetMover >	TorsionSetMoverOP
typedef utility::pointer::shared_ptr < TorsionSetMover const >	TorsionSetMoverCOP
typedef utility::pointer::shared_ptr < UniformRotationMover >	UniformRotationMoverOP
typedef utility::pointer::shared_ptr < UniformRotationMover const >	UniformRotationMoverCOP
typedef utility::pointer::shared_ptr < UniformTranslationMover >	UniformTranslationMoverOP
typedef utility::pointer::shared_ptr < UniformTranslationMover const >	UniformTranslationMoverCOP
typedef utility::pointer::shared_ptr < VirtualRootMover >	VirtualRootMoverOP
typedef utility::pointer::shared_ptr < VirtualRootMover const >	VirtualRootMoverCOP
typedef utility::pointer::shared_ptr < WobbleMover >	WobbleMoverOP
typedef utility::pointer::shared_ptr < const WobbleMover >	WobbleMoverCOP

Enumerations
enum	DisulfideCyclizationViability { DCV_NOT_CYCLIZABLE, DCV_CYCLIZABLE, DCV_ALREADY_CYCLIZED }

Functions
utility::vector1 < numeric::xyzVector < core::Real > >	Ca_coords (core::pose::Pose const &pose, utility::vector1< core::Size > const positions)
utility::vector1 < numeric::xyzVector < core::Real > >	Ca_coord (core::pose::Pose const &pose, utility::vector1< core::Size > const positions)
std::ostream &	operator<< (std::ostream &os, BackboneMover const &mover)
std::ostream &	operator<< (std::ostream &os, BoltzmannRotamerMover const &mover)
core::Size	check_if_proton_chi_atom (core::pose::Pose const &pose, core::Size const i, core::Size const j)
void	apply_ideal_coordinates_for_alternative_pucker (core::pose::Pose const &pose, core::pose::Pose &pose_reference)
void	setup_vary_rna_bond_geometry (core::kinematics::MoveMap &mm, core::pose::Pose &pose, toolbox::AllowInsertCOP allow_insert, core::scoring::ScoreType score_type)
void	setup_vary_polar_hydrogen_geometry (core::kinematics::MoveMap &mm, core::pose::Pose &pose, toolbox::AllowInsertCOP allow_insert)
static thread_local basic::Tracer	TR ("protocols.simple_moves.CutChainMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.CyclizationMover")
static thread_local basic::Tracer	TR ("protocols.protein_interface_design.movers.ddG")
static thread_local basic::Tracer	TR ("protocols.simple_moves.DisulfideInsertionMover")
conformation::PointGraphOP	setup_dme_point_graph (pose::Pose const &ref_pose, Real const threshold)
Real	point_graph_dme (conformation::PointGraph const &pg, pose::Pose const &pose)
std::ostream &	operator<< (std::ostream &os, DOFHistogramRecorder const &dof_recorder)
utility::vector1< core::Real >	uniform_dof_distribution (core::id::DOF_Type dof_type, core::Size num_bins, core::Real min, core::Real max)
static thread_local basic::Tracer	TR ("protocols.simple_moves.DumpPdb")
static thread_local basic::Tracer	TR ("protocols.simple_moves.FavorSequenceProfile")
static thread_local basic::Tracer	TR ("protocols.simple_moves.FavorSymmetricSequence")
static thread_local basic::Tracer	TR ("protocols.simple_moves.ForceDisulfidesMover")
static thread_local basic::Tracer	tr ("protocols.simple_moves.FragmentMover")
std::ostream &	operator<< (std::ostream &os, ClassicFragmentMover const &cfmover)
static thread_local basic::Tracer	TR ("protocols.simple_moves.GreenPacker")
static thread_local basic::Tracer	trGunnCost ("protocols.FragmentMover.GunnCost")
static thread_local basic::Tracer	TR ("protocols.simple_moves.MembraneTopology")
static thread_local basic::Tracer	TR ("protocols.simple_moves.MinMover")
std::ostream &	operator<< (std::ostream &os, MinMover const &mover)
static thread_local basic::Tracer	TR ("protocols.simple_moves.MinPackMover")
static thread_local basic::Tracer	TR ("protocols.mover.MissingDensityToJumpMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.ModifyVariantTypeMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.MutateResidue")
static thread_local basic::Tracer	TR ("protocols.simple_moves.O2M_MutateMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.PackRotamersMover")
std::ostream &	operator<< (std::ostream &os, PackRotamersMover const &mover)
static thread_local basic::Tracer	TR ("protocols.simple_moves.PackRotamersMoverLazy")
static thread_local basic::Tracer	TR ("protocols.simple_moves.PDBReloadMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.RepackSidechainsMover")
static thread_local basic::Tracer	TR ("protocol.mover.RepulsiveOnlyMover")
static thread_local basic::Tracer	tr ("protocols.simple_moves.ResTypeFragmentMover")
std::ostream &	operator<< (std::ostream &os, ReturnSidechainMover const &mover)
std::ostream &	operator<< (std::ostream &output, RingConformationMover const &object_to_output)
static thread_local basic::Tracer	TR ("protocols.moves.RotamerizeMover")
std::ostream &	operator<< (std::ostream &os, RotamerTrialsMinMover const &mover)
std::ostream &	operator<< (std::ostream &os, RotamerTrialsMover const &mover)
static thread_local basic::Tracer	TR ("protocols.simple_moves.SaneMinMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.ScoreMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.SetTorsion")
static thread_local basic::Tracer	TR ("protocols.simple_moves.SuperimposeMover")
std::ostream &	operator<< (std::ostream &os, SwitchResidueTypeSetMover const &mover)
static thread_local basic::Tracer	tr ("protocols.simple_moves.FragmentMover")
static thread_local basic::Tracer	TR ("protocols.simple_moves.VirtualRootMover")

Variables
static basic::Tracer	TR ("protocols.simple_moves.CombinePoseMover")
static basic::Tracer	TR ("protocols.simple_moves.FindConsensusSequence")
static basic::Tracer	TR ("protocols.simple_moves.MSDMover")
static basic::Tracer	TR ("protocols.simple_moves.RepeatPropagationMover")
const int	VISITED = 1
const int	PREVIOUS_HILL = 2
const int	HILL = 3
const int	VISITED_HILL = 4
const double	ED = 2
const double	KT = 15

Typedef Documentation

typedef utility::pointer::shared_ptr< AddChainMover const > protocols::simple_moves::AddChainMoverCOP

typedef utility::pointer::shared_ptr< AddChainMover > protocols::simple_moves::AddChainMoverOP

typedef utility::pointer::shared_ptr< AddJobPairData const > protocols::simple_moves::AddJobPairDataCOP

typedef utility::pointer::shared_ptr< AddJobPairData > protocols::simple_moves::AddJobPairDataOP

typedef utility::pointer::shared_ptr< AlignChainMover const > protocols::simple_moves::AlignChainMoverCOP

typedef utility::pointer::shared_ptr< AlignChainMover > protocols::simple_moves::AlignChainMoverOP

typedef utility::pointer::shared_ptr< BackboneMover const > protocols::simple_moves::BackboneMoverCOP

typedef utility::pointer::shared_ptr< BackboneMover > protocols::simple_moves::BackboneMoverOP

typedef utility::pointer::shared_ptr< BBConRotMover const > protocols::simple_moves::BBConRotMoverCOP

typedef utility::pointer::shared_ptr< BBConRotMover > protocols::simple_moves::BBConRotMoverOP

typedef utility::pointer::shared_ptr< BBG8T3AMover const > protocols::simple_moves::BBG8T3AMoverCOP

typedef utility::pointer::shared_ptr< BBG8T3AMover > protocols::simple_moves::BBG8T3AMoverOP

typedef utility::pointer::shared_ptr< BBGaussianMover const > protocols::simple_moves::BBGaussianMoverCOP

typedef utility::pointer::shared_ptr< BBGaussianMover > protocols::simple_moves::BBGaussianMoverOP

typedef utility::pointer::shared_ptr< BoltzmannRotamerMover const > protocols::simple_moves::BoltzmannRotamerMoverCOP

typedef utility::pointer::shared_ptr< BoltzmannRotamerMover > protocols::simple_moves::BoltzmannRotamerMoverOP

typedef utility::pointer::shared_ptr< ChainSplitMover const > protocols::simple_moves::ChainSplitMoverCOP

typedef utility::pointer::shared_ptr< ChainSplitMover > protocols::simple_moves::ChainSplitMoverOP

typedef utility::pointer::shared_ptr< ChangeAndResetFoldTreeMover const > protocols::simple_moves::ChangeAndResetFoldTreeMoverCOP

typedef utility::pointer::shared_ptr< ChangeAndResetFoldTreeMover > protocols::simple_moves::ChangeAndResetFoldTreeMoverOP

typedef utility::pointer::shared_ptr< ClassicFragmentMover const > protocols::simple_moves::ClassicFragmentMoverCOP

typedef utility::pointer::shared_ptr< ClassicFragmentMover > protocols::simple_moves::ClassicFragmentMoverOP

typedef utility::pointer::shared_ptr< CombinePoseMover const > protocols::simple_moves::CombinePoseMoverCOP

typedef utility::pointer::shared_ptr< CombinePoseMover > protocols::simple_moves::CombinePoseMoverOP

typedef utility::pointer::shared_ptr< ConsensusDesignMover > protocols::simple_moves::ConsensusDesignMoverOP

typedef utility::pointer::shared_ptr< ConstrainToIdealMover const > protocols::simple_moves::ConstrainToIdealMoverCOP

typedef utility::pointer::shared_ptr< ConstrainToIdealMover > protocols::simple_moves::ConstrainToIdealMoverOP

typedef utility::pointer::shared_ptr< ConstraintSetMover const > protocols::simple_moves::ConstraintSetMoverCOP

typedef utility::pointer::shared_ptr< ConstraintSetMover > protocols::simple_moves::ConstraintSetMoverOP

typedef utility::pointer::shared_ptr< ContingentAcceptMover const > protocols::simple_moves::ContingentAcceptMoverCOP

typedef utility::pointer::shared_ptr< ContingentAcceptMover > protocols::simple_moves::ContingentAcceptMoverOP

typedef utility::pointer::shared_ptr< CopyDofMover const > protocols::simple_moves::CopyDofMoverCOP

typedef utility::pointer::shared_ptr< CopyDofMover > protocols::simple_moves::CopyDofMoverOP

typedef utility::pointer::shared_ptr< CoupledMover const > protocols::simple_moves::CoupledMoverCOP

typedef utility::pointer::shared_ptr< CoupledMover > protocols::simple_moves::CoupledMoverOP

typedef utility::pointer::shared_ptr< CutChainMover const > protocols::simple_moves::CutChainMoverCOP

typedef utility::pointer::shared_ptr< CutChainMover > protocols::simple_moves::CutChainMoverOP

typedef utility::pointer::shared_ptr< CyclizationMover const > protocols::simple_moves::CyclizationMoverCOP

typedef utility::pointer::shared_ptr< CyclizationMover > protocols::simple_moves::CyclizationMoverOP

typedef utility::pointer::shared_ptr< ddG const > protocols::simple_moves::ddGCOP

typedef utility::pointer::shared_ptr< ddG > protocols::simple_moves::ddGOP

typedef utility::pointer::shared_ptr< DesignRepackMover const > protocols::simple_moves::DesignRepackMoverCOP

typedef utility::pointer::shared_ptr< DesignRepackMover > protocols::simple_moves::DesignRepackMoverOP

typedef utility::pointer::shared_ptr< DisulfideInsertionMover const > protocols::simple_moves::DisulfideInsertionMoverCOP

typedef utility::pointer::shared_ptr< DisulfideInsertionMover > protocols::simple_moves::DisulfideInsertionMoverOP

typedef utility::pointer::shared_ptr< EnergyCutRotamerTrialsMinMover const > protocols::simple_moves::EnergyCutRotamerTrialsMinMoverCOP

typedef utility::pointer::shared_ptr< EnergyCutRotamerTrialsMinMover > protocols::simple_moves::EnergyCutRotamerTrialsMinMoverOP

typedef utility::pointer::shared_ptr< EnergyCutRotamerTrialsMover const > protocols::simple_moves::EnergyCutRotamerTrialsMoverCOP

typedef utility::pointer::shared_ptr< EnergyCutRotamerTrialsMover > protocols::simple_moves::EnergyCutRotamerTrialsMoverOP

typedef utility::pointer::shared_ptr<ExtendedPoseMover const> protocols::simple_moves::ExtendedPoseMoverCOP

typedef utility::pointer::shared_ptr<ExtendedPoseMover> protocols::simple_moves::ExtendedPoseMoverOP

typedef utility::pointer::shared_ptr< FavorSymmetricSequence const > protocols::simple_moves::FavorSymmetricSequenceCOP

typedef utility::pointer::shared_ptr< FavorSymmetricSequence > protocols::simple_moves::FavorSymmetricSequenceOP

typedef utility::pointer::shared_ptr< FindConsensusSequence const > protocols::simple_moves::FindConsensusSequenceCOP

typedef utility::pointer::shared_ptr< FindConsensusSequence > protocols::simple_moves::FindConsensusSequenceOP

typedef utility::pointer::shared_ptr< ForceDisulfidesMover const > protocols::simple_moves::ForceDisulfideMoverCOP

typedef utility::pointer::shared_ptr< ForceDisulfidesMover > protocols::simple_moves::ForceDisulfideMoverOP

typedef utility::pointer::shared_ptr< FragmentCost const > protocols::simple_moves::FragmentCostCOP

typedef utility::pointer::shared_ptr< FragmentCost > protocols::simple_moves::FragmentCostOP

typedef utility::pointer::shared_ptr< FragmentMover const > protocols::simple_moves::FragmentMoverCOP

typedef utility::pointer::shared_ptr< FragmentMover > protocols::simple_moves::FragmentMoverOP

typedef utility::pointer::shared_ptr< GenericMonteCarloMover const > protocols::simple_moves::GenericMonteCarloMoverCOP

typedef utility::pointer::shared_ptr< GenericMonteCarloMover > protocols::simple_moves::GenericMonteCarloMoverOP

typedef boost::function<bool(core::Size, core::Size, const core::pose::Pose&, core::scoring::ScoreFunctionOP)> protocols::simple_moves::GenericMonteCarloMoverTrigger

Trigger API definition.

typedef utility::pointer::shared_ptr< GreenPacker const > protocols::simple_moves::GreenPackerCOP

typedef utility::pointer::shared_ptr< GreenPacker > protocols::simple_moves::GreenPackerOP

typedef utility::pointer::shared_ptr< GroupDiscriminator const > protocols::simple_moves::GroupDiscriminatorCOP

typedef utility::pointer::shared_ptr< GroupDiscriminator > protocols::simple_moves::GroupDiscriminatorOP

typedef utility::pointer::shared_ptr< LoadPDBMover const > protocols::simple_moves::LoadPDBMoverCOP

typedef utility::pointer::shared_ptr< LoadPDBMover > protocols::simple_moves::LoadPDBMoverOP

typedef utility::pointer::shared_ptr< LoadUnboundRotMover const > protocols::simple_moves::LoadUnboundRotMoverCOP

typedef utility::pointer::shared_ptr< LoadUnboundRotMover > protocols::simple_moves::LoadUnboundRotMoverOP

typedef utility::pointer::shared_ptr< MakePolyXMover > protocols::simple_moves::MakePolyXMoverOP

typedef utility::pointer::shared_ptr< MembraneTopology const > protocols::simple_moves::MembraneTopologyCOP

typedef utility::pointer::shared_ptr< MembraneTopology > protocols::simple_moves::MembraneTopologyOP

typedef utility::pointer::shared_ptr< MinimalRotamer const > protocols::simple_moves::MinimalRotamerCOP

typedef utility::pointer::shared_ptr< MinimalRotamer > protocols::simple_moves::MinimalRotamerOP

typedef utility::pointer::shared_ptr< MinMover const > protocols::simple_moves::MinMoverCOP

typedef utility::pointer::shared_ptr< MinMover > protocols::simple_moves::MinMoverOP

typedef utility::pointer::shared_ptr< MinPackMover const > protocols::simple_moves::MinPackMoverCOP

typedef utility::pointer::shared_ptr< MinPackMover > protocols::simple_moves::MinPackMoverOP

typedef utility::pointer::shared_ptr< MissingDensityToJumpMover const > protocols::simple_moves::MissingDensityToJumpMoverCOP

typedef utility::pointer::shared_ptr< MissingDensityToJumpMover > protocols::simple_moves::MissingDensityToJumpMoverOP

typedef utility::pointer::shared_ptr< ModifyVariantTypeMover const > protocols::simple_moves::ModifyVariantTypeMoverCOP

typedef utility::pointer::shared_ptr< ModifyVariantTypeMover > protocols::simple_moves::ModifyVariantTypeMoverOP

typedef utility::pointer::shared_ptr< MonteCarloRecover const > protocols::simple_moves::MonteCarloRecoverCOP

typedef utility::pointer::shared_ptr< MonteCarloRecover > protocols::simple_moves::MonteCarloRecoverOP

typedef utility::pointer::shared_ptr< MonteCarloReset const > protocols::simple_moves::MonteCarloResetCOP

typedef utility::pointer::shared_ptr< MonteCarloReset > protocols::simple_moves::MonteCarloResetOP

typedef utility::pointer::shared_ptr< MonteCarloTest const > protocols::simple_moves::MonteCarloTestCOP

typedef utility::pointer::shared_ptr< MonteCarloTest > protocols::simple_moves::MonteCarloTestOP

typedef utility::pointer::shared_ptr< MSDMover const > protocols::simple_moves::MSDMoverCOP

typedef utility::pointer::shared_ptr< MSDMover > protocols::simple_moves::MSDMoverOP

typedef utility::pointer::shared_ptr< MutateResidue const > protocols::simple_moves::MutateResidueCOP

typedef utility::pointer::shared_ptr< MutateResidue > protocols::simple_moves::MutateResidueOP

typedef boost::shared_ptr<O2M_MutateMover> protocols::simple_moves::O2M_MutateMoverSP

typedef utility::pointer::shared_ptr< PackRotamersMover const > protocols::simple_moves::PackRotamersMoverCOP

typedef utility::pointer::shared_ptr< PackRotamersMoverLazy const > protocols::simple_moves::PackRotamersMoverLazyCOP

typedef utility::pointer::shared_ptr< PackRotamersMoverLazy > protocols::simple_moves::PackRotamersMoverLazyOP

typedef utility::pointer::shared_ptr< PackRotamersMover > protocols::simple_moves::PackRotamersMoverOP

typedef utility::pointer::shared_ptr< PDBReloadMover const > protocols::simple_moves::PDBReloadMoverCOP

typedef utility::pointer::shared_ptr< PDBReloadMover > protocols::simple_moves::PDBReloadMoverOP

typedef utility::pointer::shared_ptr< PeptideStapleMover const > protocols::simple_moves::PeptideStapleMoverCOP

typedef utility::pointer::shared_ptr< PeptideStapleMover > protocols::simple_moves::PeptideStapleMoverOP

typedef utility::pointer::shared_ptr< ProlineFixMover const > protocols::simple_moves::ProlineFixMoverCOP

typedef utility::pointer::shared_ptr< ProlineFixMover > protocols::simple_moves::ProlineFixMoverOP

typedef utility::pointer::shared_ptr< PSSM2BfactorMover const > protocols::simple_moves::PSSM2BfactorMoverCOP

typedef utility::pointer::shared_ptr< PSSM2BfactorMover > protocols::simple_moves::PSSM2BfactorMoverOP

typedef utility::pointer::shared_ptr< RandomOmegaFlipMover const > protocols::simple_moves::RandomOmegaFlipMoverCOP

typedef utility::pointer::shared_ptr< RandomOmegaFlipMover > protocols::simple_moves::RandomOmegaFlipMoverOP

typedef utility::pointer::shared_ptr< RandomTorsionMover const > protocols::simple_moves::RandomTorsionMoverCOP

typedef utility::pointer::shared_ptr< RandomTorsionMover > protocols::simple_moves::RandomTorsionMoverOP

typedef utility::pointer::shared_ptr< RepackSidechainsMover const > protocols::simple_moves::RepackSidechainsMoverCOP

typedef utility::pointer::shared_ptr< RepackSidechainsMover > protocols::simple_moves::RepackSidechainsMoverOP

typedef utility::pointer::shared_ptr< RepeatPropagationMover const > protocols::simple_moves::RepeatPropagationMoverCOP

typedef utility::pointer::shared_ptr< RepeatPropagationMover > protocols::simple_moves::RepeatPropagationMoverOP

typedef utility::pointer::shared_ptr< RepulsiveOnlyMover const > protocols::simple_moves::RepulsiveOnlyMoverCOP

typedef utility::pointer::shared_ptr< RepulsiveOnlyMover > protocols::simple_moves::RepulsiveOnlyMoverOP

typedef utility::pointer::shared_ptr< ResetBaselineMover const > protocols::simple_moves::ResetBaselineMoverCOP

typedef utility::pointer::shared_ptr< ResetBaselineMover > protocols::simple_moves::ResetBaselineMoverOP

typedef utility::pointer::shared_ptr< ResidueTypeConstraintMover const > protocols::simple_moves::ResidueTypeConstraintMoverCOP

typedef utility::pointer::shared_ptr< ResidueTypeConstraintMover > protocols::simple_moves::ResidueTypeConstraintMoverOP

typedef utility::pointer::shared_ptr< ResTypeFragmentMover const > protocols::simple_moves::ResTypeFragmentMoverCOP

typedef utility::pointer::shared_ptr< ResTypeFragmentMover > protocols::simple_moves::ResTypeFragmentMoverOP

typedef utility::pointer::shared_ptr< ReturnSidechainMover const > protocols::simple_moves::ReturnSidechainMoverCOP

typedef utility::pointer::shared_ptr< ReturnSidechainMover > protocols::simple_moves::ReturnSidechainMoverOP

typedef utility::pointer::shared_ptr<RingConformationMover const> protocols::simple_moves::RingConformationMoverCOP

typedef utility::pointer::shared_ptr<RingConformationMover> protocols::simple_moves::RingConformationMoverOP

typedef utility::pointer::shared_ptr< RotamerizeMover const > protocols::simple_moves::RotamerizeMoverCOP

typedef utility::pointer::shared_ptr< RotamerizeMover > protocols::simple_moves::RotamerizeMoverOP

typedef utility::pointer::shared_ptr< RotamerTrialsMinMover const > protocols::simple_moves::RotamerTrialsMinMoverCOP

typedef utility::pointer::shared_ptr< RotamerTrialsMinMover > protocols::simple_moves::RotamerTrialsMinMoverOP

typedef utility::pointer::shared_ptr< RotamerTrialsMover const > protocols::simple_moves::RotamerTrialsMoverCOP

typedef utility::pointer::shared_ptr< RotamerTrialsMover > protocols::simple_moves::RotamerTrialsMoverOP

typedef utility::pointer::shared_ptr< SaneMinMover const > protocols::simple_moves::SaneMinMoverCOP

typedef utility::pointer::shared_ptr< SaneMinMover > protocols::simple_moves::SaneMinMoverOP

typedef utility::vector1< core::Real > protocols::simple_moves::ScoreList

typedef utility::pointer::shared_ptr< ScoreMover const > protocols::simple_moves::ScoreMoverCOP

typedef utility::pointer::shared_ptr< ScoreMover > protocols::simple_moves::ScoreMoverOP

typedef utility::pointer::shared_ptr< SequenceProfileMover const > protocols::simple_moves::SequenceProfileMoverCOP

typedef utility::pointer::shared_ptr< SequenceProfileMover > protocols::simple_moves::SequenceProfileMoverOP

typedef utility::pointer::shared_ptr< SetReturningPackRotamersMover const > protocols::simple_moves::SetReturningPackRotamersMoverCOP

typedef utility::pointer::shared_ptr< SetReturningPackRotamersMover > protocols::simple_moves::SetReturningPackRotamersMoverOP

typedef utility::pointer::shared_ptr< SetTorsion const > protocols::simple_moves::SetTorsionCOP

typedef utility::pointer::shared_ptr< SetTorsion > protocols::simple_moves::SetTorsionOP

typedef utility::pointer::shared_ptr< ShakeStructureMover const > protocols::simple_moves::ShakeStructureMoverCOP

typedef utility::pointer::shared_ptr< ShakeStructureMover > protocols::simple_moves::ShakeStructureMoverOP

typedef utility::pointer::shared_ptr< ShearMover const > protocols::simple_moves::ShearMoverCOP

typedef utility::pointer::shared_ptr< ShearMover > protocols::simple_moves::ShearMoverOP

typedef utility::pointer::shared_ptr< ShortBackrubMover const > protocols::simple_moves::ShortBackrubMoverCOP

typedef utility::pointer::shared_ptr< ShortBackrubMover > protocols::simple_moves::ShortBackrubMoverOP

typedef utility::pointer::shared_ptr< SmallMover const > protocols::simple_moves::SmallMoverCOP

typedef utility::pointer::shared_ptr< SmallMover > protocols::simple_moves::SmallMoverOP

typedef utility::pointer::shared_ptr< SmoothFragmentMover const > protocols::simple_moves::SmoothFragmentMoverCOP

typedef utility::pointer::shared_ptr< SmoothFragmentMover > protocols::simple_moves::SmoothFragmentMoverOP

typedef utility::pointer::shared_ptr< SuperimposeMover const > protocols::simple_moves::SuperimposeMoverCOP

typedef utility::pointer::shared_ptr< SuperimposeMover > protocols::simple_moves::SuperimposeMoverOP

typedef utility::pointer::shared_ptr< SwitchChainOrderMover const > protocols::simple_moves::SwitchChainOrderMoverCOP

typedef utility::pointer::shared_ptr< SwitchChainOrderMover > protocols::simple_moves::SwitchChainOrderMoverOP

typedef utility::pointer::shared_ptr< SwitchResidueTypeSetMover const > protocols::simple_moves::SwitchResidueTypeSetMoverCOP

typedef utility::pointer::shared_ptr< SwitchResidueTypeSetMover > protocols::simple_moves::SwitchResidueTypeSetMoverOP

typedef utility::pointer::shared_ptr< SymmetricFragmentMover const > protocols::simple_moves::SymmetricFragmentMoverCOP

typedef utility::pointer::shared_ptr< SymmetricFragmentMover > protocols::simple_moves::SymmetricFragmentMoverOP

typedef utility::pointer::shared_ptr< TaskAwareMinMover const > protocols::simple_moves::TaskAwareMinMoverCOP

typedef utility::pointer::shared_ptr< TaskAwareMinMover > protocols::simple_moves::TaskAwareMinMoverOP

typedef utility::pointer::shared_ptr< TorsionDOFMover const > protocols::simple_moves::TorsionDOFMoverCOP

typedef utility::pointer::shared_ptr< TorsionDOFMover > protocols::simple_moves::TorsionDOFMoverOP

typedef utility::pointer::shared_ptr< TorsionSetMover const > protocols::simple_moves::TorsionSetMoverCOP

typedef utility::pointer::shared_ptr< TorsionSetMover > protocols::simple_moves::TorsionSetMoverOP

typedef utility::pointer::shared_ptr< UniformRotationMover const > protocols::simple_moves::UniformRotationMoverCOP

typedef utility::pointer::shared_ptr< UniformRotationMover > protocols::simple_moves::UniformRotationMoverOP

typedef utility::pointer::shared_ptr< UniformTranslationMover const > protocols::simple_moves::UniformTranslationMoverCOP

typedef utility::pointer::shared_ptr< UniformTranslationMover > protocols::simple_moves::UniformTranslationMoverOP

typedef utility::pointer::shared_ptr< UserDefinedGroupDiscriminator > protocols::simple_moves::UserDefinedGroupDiscriminatorOP

typedef utility::pointer::shared_ptr< VirtualRootMover const > protocols::simple_moves::VirtualRootMoverCOP

typedef utility::pointer::shared_ptr< VirtualRootMover > protocols::simple_moves::VirtualRootMoverOP

typedef utility::pointer::shared_ptr< const WobbleMover > protocols::simple_moves::WobbleMoverCOP

typedef utility::pointer::shared_ptr< WobbleMover > protocols::simple_moves::WobbleMoverOP

Enumeration Type Documentation

enum protocols::simple_moves::DisulfideCyclizationViability

Enumerator
DCV_NOT_CYCLIZABLE
DCV_CYCLIZABLE
DCV_ALREADY_CYCLIZED

Function Documentation

void protocols::simple_moves::apply_ideal_coordinates_for_alternative_pucker	(	core::pose::Pose const &	pose,
		core::pose::Pose &	pose_reference
	)

References core::pose::rna::apply_ideal_c2endo_sugar_coords(), apply_pucker(), DELTA, core::chemical::ResidueType::is_RNA(), core::conformation::Residue::mainchain_torsion(), NORTH, option, core::pose::Pose::residue(), core::pose::Pose::residue_type(), SOUTH, and core::pose::Pose::total_residue().

Referenced by protocols::simple_moves::ConstrainToIdealMover::create_pose_reference().

utility::vector1< numeric::xyzVector< core::Real > > protocols::simple_moves::Ca_coord	(	core::pose::Pose const &	pose,
		utility::vector1< core::Size > const	positions
	)

References protocols::simple_filters::coords(), core::pose::Pose::residue(), and core::conformation::Residue::xyz().

Referenced by protocols::simple_moves::AlignChainMover::apply().

utility::vector1< numeric::xyzVector< core::Real > > protocols::simple_moves::Ca_coords	(	core::pose::Pose const &	pose,
		utility::vector1< core::Size > const	positions
	)

References protocols::simple_filters::coords(), core::pose::Pose::residue(), and core::conformation::Residue::xyz().

Referenced by protocols::simple_moves::AddChainMover::swap_chain().

core::Size protocols::simple_moves::check_if_proton_chi_atom	(	core::pose::Pose const &	pose,
		core::Size const	i,
		core::Size const	j
	)

References core::chemical::ResidueType::chi_atoms(), core::chemical::ResidueType::n_proton_chi(), core::chemical::ResidueType::proton_chi_2_chi(), and core::pose::Pose::residue_type().

Referenced by protocols::simple_moves::ConstrainToIdealMover::vary_bond_geometry().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		SwitchResidueTypeSetMover const &	mover
	)

References protocols::simple_moves::SwitchResidueTypeSetMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		DOFHistogramRecorder const &	dof_recorder
	)

References protocols::simple_moves::DOFHistogramRecorder::histograms().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		RotamerTrialsMover const &	mover
	)

References protocols::simple_moves::RotamerTrialsMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		ReturnSidechainMover const &	mover
	)

References protocols::simple_moves::ReturnSidechainMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		RotamerTrialsMinMover const &	mover
	)

References protocols::simple_moves::RotamerTrialsMinMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	output,
		RingConformationMover const &	object_to_output
	)

References protocols::simple_moves::RingConformationMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		BackboneMover const &	mover
	)

References protocols::simple_moves::BackboneMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		PackRotamersMover const &	mover
	)

References protocols::simple_moves::PackRotamersMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		BoltzmannRotamerMover const &	mover
	)

References protocols::simple_moves::BoltzmannRotamerMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		MinMover const &	mover
	)

References protocols::simple_moves::MinMover::show().

std::ostream & protocols::simple_moves::operator<<	(	std::ostream &	os,
		ClassicFragmentMover const &	cfmover
	)

References protocols::simple_moves::ClassicFragmentMover::show().

Real protocols::simple_moves::point_graph_dme	(	conformation::PointGraph const &	pg,
		pose::Pose const &	pose
	)

Calculate the dme using a pointgraph

References core::graph::UEVertex< V, E >::const_upper_edge_list_begin(), core::graph::UEVertex< V, E >::const_upper_edge_list_end(), core::graph::UpperEdgeGraph< V, E >::get_vertex(), core::conformation::Residue::nbr_atom_xyz(), core::pose::Pose::residue(), protocols::analysis::total, and core::pose::Pose::total_residue().

Referenced by protocols::simple_moves::DME_FilterMover::apply().

conformation::PointGraphOP protocols::simple_moves::setup_dme_point_graph	(	pose::Pose const &	ref_pose,
		Real const	threshold
	)

Setup a pointgraph for later use in dma calcs

References core::pose::Pose::conformation(), and core::conformation::residue_point_graph_from_conformation().

Referenced by protocols::simple_moves::DME_FilterMover::apply().

void protocols::simple_moves::setup_vary_polar_hydrogen_geometry	(	core::kinematics::MoveMap &	mm,
		core::pose::Pose &	pose,
		toolbox::AllowInsertCOP	allow_insert
	)

References protocols::simple_moves::ConstrainToIdealMover::apply(), core::scoring::bond_geometry, protocols::simple_moves::ConstrainToIdealMover::set_allow_insert(), protocols::simple_moves::ConstrainToIdealMover::set_just_polar_hydrogens(), and protocols::simple_moves::ConstrainToIdealMover::set_score_type().

Referenced by protocols::stepwise::modeler::StepWiseMinimizer::setup_vary_bond_geometry().

void protocols::simple_moves::setup_vary_rna_bond_geometry	(	core::kinematics::MoveMap &	mm,
		core::pose::Pose &	pose,
		toolbox::AllowInsertCOP	allow_insert,
		core::scoring::ScoreType	score_type
	)

References protocols::simple_moves::ConstrainToIdealMover::apply(), protocols::simple_moves::ConstrainToIdealMover::set_allow_insert(), protocols::simple_moves::ConstrainToIdealMover::set_just_rna_backbone(), and protocols::simple_moves::ConstrainToIdealMover::set_score_type().

Referenced by protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer::apply(), protocols::farna::RNA_Minimizer::setup_movemap(), and protocols::stepwise::modeler::StepWiseMinimizer::setup_vary_bond_geometry().

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.FavorSymmetricSequence"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SaneMinMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.VirtualRootMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MembraneTopology"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.O2M_MutateMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::tr ( "protocols.simple_moves.FragmentMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.PDBReloadMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.DumpPdb"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.DisulfideInsertionMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocol.mover.RepulsiveOnlyMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.ForceDisulfidesMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.mover.MissingDensityToJumpMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SuperimposeMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.FavorSequenceProfile"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.RepackSidechainsMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.ModifyVariantTypeMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::tr ( "protocols.simple_moves.ResTypeFragmentMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.moves.RotamerizeMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MutateResidue"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MinPackMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::tr ( "protocols.simple_moves.FragmentMover"  )

static

Referenced by protocols::simple_moves::ClassicFragmentMover::apply(), protocols::simple_moves::SymmetricFragmentMover::apply_fragment(), protocols::simple_moves::ResTypeFragmentMover::apply_frames(), protocols::simple_moves::ClassicFragmentMover::apply_frames(), protocols::simple_moves::ClassicFragmentMover::choose_window_start(), protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover::compute_rotdensities(), protocols::simple_moves::ClassicFragmentMover::end_bias_check(), protocols::simple_moves::FragmentMover::set_fragments(), and protocols::simple_moves::ClassicFragmentMover::valid_ss().

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.PackRotamersMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.PackRotamersMoverLazy"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.GreenPacker"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.CyclizationMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.CutChainMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MinMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SetTorsion"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.ScoreMover"  )

static

static thread_local basic::Tracer protocols::simple_moves::TR ( "protocols.protein_interface_design.movers.ddG"  )

static

static thread_local basic::Tracer protocols::simple_moves::trGunnCost ( "protocols.FragmentMover.GunnCost"  )

static

utility::vector1< core::Real > protocols::simple_moves::uniform_dof_distribution	(	core::id::DOF_Type	dof_type,
		core::Size	num_bins,
		core::Real	min,
		core::Real	max
	)

References core::id::PHI, runtime_assert, and core::id::THETA.

Referenced by protocols::simple_moves::DOFHistogramRecorder::write_mse_summary().

Variable Documentation

const double protocols::simple_moves::ED = 2

const int protocols::simple_moves::HILL = 3

Referenced by protocols::simple_moves::TailsScoreMover::score_mode3(), and protocols::simple_moves::TailsScoreMover::visit().

const double protocols::simple_moves::KT = 15

Referenced by protocols::simple_moves::TailsScoreMover::score_mode2(), and protocols::simple_moves::TailsScoreMover::score_mode3().

const int protocols::simple_moves::PREVIOUS_HILL = 2

Referenced by protocols::simple_moves::TailsScoreMover::score_mode3(), and protocols::simple_moves::TailsScoreMover::visit().

basic::Tracer protocols::simple_moves::TR("protocols.simple_moves.FindConsensusSequence")

static

basic::Tracer protocols::simple_moves::TR("protocols.simple_moves.CombinePoseMover")

static

Referenced by protocols::simple_moves::GenericMonteCarloMover::accept(), protocols::simple_moves::ConstrainToIdealMover::add_bond_angle_constraint(), protocols::simple_moves::ConstrainToIdealMover::add_bond_dihedral_constraint(), protocols::simple_moves::ConstrainToIdealMover::add_bond_length_constraint(), protocols::simple_moves::AddChainMover::add_new_chain(), protocols::simple_moves::PSSM2BfactorMover::apply(), protocols::simple_moves::FavorSymmetricSequence::apply(), protocols::simple_moves::ResetBaselineMover::apply(), protocols::simple_moves::ContingentAcceptMover::apply(), protocols::simple_moves::AddConstraintsToCurrentConformationMover::apply(), protocols::simple_moves::SequenceProfileMover::apply(), protocols::simple_moves::VirtualRootMover::apply(), protocols::simple_moves::AlignChainMover::apply(), protocols::simple_moves::LoadPDBMover::apply(), protocols::simple_moves::O2M_MutateMover::apply(), protocols::simple_moves::ForceDisulfidesMover::apply(), protocols::simple_moves::DumpPdb::apply(), protocols::simple_moves::SwitchChainOrderMover::apply(), protocols::simple_moves::PeptideStapleMover::apply(), protocols::simple_moves::SuperimposeMover::apply(), protocols::simple_moves::CombinePoseMover::apply(), protocols::simple_moves::SetReturningPackRotamersMover::apply(), protocols::simple_moves::BBConRotMover::apply(), protocols::simple_moves::FavorSequenceProfile::apply(), protocols::simple_moves::ConstraintSetMover::apply(), protocols::simple_moves::FindConsensusSequence::apply(), protocols::simple_moves::ddG::apply(), protocols::simple_moves::MissingDensityToJumpMover::apply(), protocols::simple_moves::RepulsiveOnlyMover::apply(), protocols::simple_moves::SetTorsion::apply(), protocols::simple_moves::ModifyVariantTypeMover::apply(), protocols::simple_moves::MSDMover::apply(), protocols::simple_moves::MutateResidue::apply(), protocols::simple_moves::SaneMinMover::apply(), protocols::simple_moves::MakePolyXMover::apply(), protocols::simple_moves::DME_FilterMover::apply(), protocols::simple_moves::RotamerizeMover::apply(), protocols::simple_moves::MonteCarloReset::apply(), protocols::simple_moves::MonteCarloTest::apply(), protocols::simple_moves::RingConformationMover::apply(), protocols::simple_moves::ScoreMover::apply(), protocols::simple_moves::ReportEffectivePKA::apply(), protocols::simple_moves::BoltzmannRotamerMover::apply(), protocols::simple_moves::RotamerTrialsMover::apply(), protocols::simple_moves::ChangeAndResetFoldTreeMover::apply(), protocols::simple_moves::MinMover::apply(), protocols::simple_moves::GenericMonteCarloMover::apply(), protocols::simple_moves::GreenPacker::apply(), protocols::simple_moves::WobbleMover::apply_fragment(), protocols::simple_moves::MSDMover::apply_linked_constraints(), protocols::simple_moves::GenericMonteCarloMover::boltzmann(), protocols::simple_moves::CutChainMover::chain_cut(), protocols::simple_moves::BBConRotMover::closure(), protocols::simple_moves::ConsensusDesignMover::create_consensus_design_task(), protocols::simple_moves::ddG::ddG(), protocols::simple_moves::PeptideStapleMover::derive_staple_constraints_(), protocols::simple_moves::ddG::fill_energy_vector(), protocols::simple_moves::GreenPacker::find_reference_and_current_rotamer_correspondence(), protocols::simple_moves::CutChainMover::foldTree(), protocols::simple_moves::BBConRotMover::get_determinant(), protocols::simple_moves::BBGaussianMover::init_kic_loop(), protocols::simple_moves::GenericMonteCarloMover::initialize(), protocols::simple_moves::GenericMonteCarloMover::load_trial_number_from_checkpoint(), protocols::simple_moves::BBConRotMover::make_move(), protocols::simple_moves::PeptideStapleMover::minimize_(), protocols::simple_moves::GenericMonteCarloMover::num_designable(), protocols::simple_moves::MinMover::parse_chi_and_bb(), protocols::simple_moves::FavorSequenceProfile::parse_def(), protocols::simple_moves::ConstraintSetMover::parse_def(), protocols::simple_moves::MutateResidue::parse_def(), protocols::simple_moves::MinMover::parse_def_opts(), protocols::simple_moves::MinMover::parse_dof_task_type(), protocols::simple_moves::MinMover::parse_dof_tasks(), protocols::simple_moves::FavorSymmetricSequence::parse_my_tag(), protocols::simple_moves::PSSM2BfactorMover::parse_my_tag(), protocols::simple_moves::ResetBaselineMover::parse_my_tag(), protocols::simple_moves::AddChainMover::parse_my_tag(), protocols::simple_moves::SequenceProfileMover::parse_my_tag(), protocols::simple_moves::CutChainMover::parse_my_tag(), protocols::simple_moves::ForceDisulfidesMover::parse_my_tag(), protocols::simple_moves::AlignChainMover::parse_my_tag(), protocols::simple_moves::LoadPDBMover::parse_my_tag(), protocols::simple_moves::AddConstraintsToCurrentConformationMover::parse_my_tag(), protocols::simple_moves::DumpPdb::parse_my_tag(), protocols::simple_moves::FavorSequenceProfile::parse_my_tag(), protocols::simple_moves::DesignRepackMover::parse_my_tag(), protocols::simple_moves::ResidueTypeConstraintMover::parse_my_tag(), protocols::simple_moves::ModifyVariantTypeMover::parse_my_tag(), protocols::simple_moves::TaskAwareMinMover::parse_my_tag(), protocols::simple_moves::ConstraintSetMover::parse_my_tag(), protocols::simple_moves::ddG::parse_my_tag(), protocols::simple_moves::Tumble::parse_my_tag(), protocols::simple_moves::MakePolyXMover::parse_my_tag(), protocols::simple_moves::MutateResidue::parse_my_tag(), protocols::simple_moves::PackRotamersMoverLazy::parse_my_tag(), protocols::simple_moves::MonteCarloRecover::parse_my_tag(), protocols::simple_moves::MonteCarloReset::parse_my_tag(), protocols::simple_moves::MinPackMover::parse_my_tag(), protocols::simple_moves::MonteCarloTest::parse_my_tag(), protocols::simple_moves::ReportEffectivePKA::parse_my_tag(), protocols::simple_moves::RotamerTrialsMinMover::parse_my_tag(), protocols::simple_moves::BBGaussianMover::parse_my_tag(), protocols::simple_moves::GenericMonteCarloMover::parse_my_tag(), protocols::simple_moves::MinMover::parse_opts(), protocols::simple_moves::GenericMonteCarloMover::parse_task_operations(), protocols::simple_moves::GenericMonteCarloMover::recover_low(), protocols::simple_moves::GenericMonteCarloMover::remove_trigger(), protocols::simple_moves::GenericMonteCarloMover::reset(), protocols::simple_moves::BBGaussianMover::set_preserve_detailed_balance(), protocols::simple_moves::FavorSequenceProfile::set_profile(), protocols::simple_moves::GenericMonteCarloMover::set_sampletype(), protocols::simple_moves::FavorSequenceProfile::set_sequence(), protocols::simple_moves::CyclizationMover::setup_connections(), protocols::simple_moves::CyclizationMover::setup_constraints(), protocols::simple_moves::BBGaussianMover::setup_list(), protocols::simple_moves::CyclizationMover::setup_minimizer(), protocols::simple_moves::CyclizationMover::setup_scorefunction(), protocols::simple_moves::AddChainMover::swap_chain(), protocols::simple_moves::BBGaussianMover::update_counting_last_PDR(), protocols::simple_moves::oop::OopMover::update_hydrogens_(), and protocols::simple_moves::BBGaussianMover::~BBGaussianMover().

basic::Tracer protocols::simple_moves::TR("protocols.simple_moves.MSDMover")

static

basic::Tracer protocols::simple_moves::TR("protocols.simple_moves.RepeatPropagationMover")

static

const int protocols::simple_moves::VISITED = 1

Referenced by protocols::simple_moves::TailsScoreMover::visit().

const int protocols::simple_moves::VISITED_HILL = 4

Referenced by protocols::simple_moves::TailsScoreMover::score_mode3(), and protocols::simple_moves::TailsScoreMover::visit().