protocols::jd2::archive Namespace Reference

Classes
class	AbstractArchiveBase
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	ArchiveBase
class	ArchiveManager
	ArchiveManager is responsible for communication with JobDistributor and organization of Batches and returning decoys. More...
class	BaseArchiveManager
	ArchiveManager is responsible for communication with JobDistributor and organization of Batches and returning decoys. More...
class	Batch
	a Batch represents a directory "batch_000xxx" that contains flags, broker-setup input-files and output-files More...
class	EvaluatedArchive
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	EXCN_Archive
class	MPIArchiveJobDistributor
	JobDistributor for the iterative ArchiveManager/Archive Framework. More...
class	NormalizedEvaluatedArchive
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	SortPredicate
class	VarianceStatisticsArchive

Typedefs
typedef utility::pointer::shared_ptr < AbstractArchiveBase >	AbstractArchiveBaseOP
typedef utility::pointer::shared_ptr < AbstractArchiveBase const >	AbstractArchiveBaseCOP
typedef utility::pointer::shared_ptr < ArchiveBase >	ArchiveBaseOP
typedef utility::pointer::shared_ptr < ArchiveBase const >	ArchiveBaseCOP
typedef utility::pointer::shared_ptr < ArchiveManager >	ArchiveManagerOP
typedef utility::pointer::shared_ptr < ArchiveManager const >	ArchiveManagerCOP
typedef ArchiveManager *	ArchiveManagerAP
typedef BaseArchiveManager *	BaseArchiveManagerAP
typedef utility::pointer::weak_ptr < ArchiveManager const >	ArchiveManagerCAP
typedef utility::pointer::shared_ptr < VarianceStatisticsArchive >	VarianceStatisticsArchiveOP
typedef utility::pointer::shared_ptr < VarianceStatisticsArchive const >	VarianceStatisticsArchiveCOP

Functions
std::ostream &	operator<< (std::ostream &out, Batch const &batch)
void	report_tag_error (Batch &batch, std::string const &expected_tag, std::string const &tag)
void	report_value_error (Batch &batch, std::string const &tag)
std::istream &	operator>> (std::istream &in, Batch &batch)
void	report_batch_inconsistency (Batch &new_batch, std::string const &tag)

Variables
int const	in_master_rank_ (1)
	our setup of dedicated processes... More...
int const	in_file_buf_rank_ (0)
int const	in_archive_rank_ (2)
int const	in_min_client_rank_ (3)
core::Size const	BATCH_SYNC = 101
core::Size const	QUEUE_EMPTY = 102
core::Size const	ADD_BATCH = 103
core::Size const	CANCEL_BATCH = 104
core::Size const	JOB_COMPLETION = 105
core::Size const	MPI_ARCHIVE_TAG = 12310925

Typedef Documentation

typedef utility::pointer::shared_ptr< AbstractArchiveBase const > protocols::jd2::archive::AbstractArchiveBaseCOP

typedef utility::pointer::shared_ptr< AbstractArchiveBase > protocols::jd2::archive::AbstractArchiveBaseOP

typedef utility::pointer::shared_ptr< ArchiveBase const > protocols::jd2::archive::ArchiveBaseCOP

typedef utility::pointer::shared_ptr< ArchiveBase > protocols::jd2::archive::ArchiveBaseOP

typedef ArchiveManager* protocols::jd2::archive::ArchiveManagerAP

typedef utility::pointer::weak_ptr< ArchiveManager const > protocols::jd2::archive::ArchiveManagerCAP

typedef utility::pointer::shared_ptr< ArchiveManager const > protocols::jd2::archive::ArchiveManagerCOP

typedef utility::pointer::shared_ptr< ArchiveManager > protocols::jd2::archive::ArchiveManagerOP

typedef BaseArchiveManager* protocols::jd2::archive::BaseArchiveManagerAP

typedef utility::pointer::shared_ptr<VarianceStatisticsArchive const> protocols::jd2::archive::VarianceStatisticsArchiveCOP

typedef utility::pointer::shared_ptr<VarianceStatisticsArchive> protocols::jd2::archive::VarianceStatisticsArchiveOP

Function Documentation

std::ostream& protocols::jd2::archive::operator<<	(	std::ostream &	out,
		Batch const &	batch
	)

References protocols::jd2::archive::Batch::show().

std::istream& protocols::jd2::archive::operator>>	(	std::istream &	in,
		Batch &	batch
	)

References protocols::jd2::archive::Batch::batch_id_, protocols::jd2::archive::Batch::decoys_returned_to_archive_, protocols::jd2::archive::Batch::has_finished_, protocols::jd2::archive::Batch::has_silent_in_, protocols::jd2::archive::Batch::intermediate_structs_, protocols::jd2::archive::Batch::is_cancelled_, protocols::jd2::archive::Batch::nstruct_, report_tag_error(), and report_value_error().

void protocols::jd2::archive::report_batch_inconsistency	(	Batch &	new_batch,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

Referenced by protocols::jd2::archive::BaseArchiveManager::finalize_batch().

void protocols::jd2::archive::report_tag_error	(	Batch &	batch,
		std::string const &	expected_tag,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

Referenced by operator>>().

void protocols::jd2::archive::report_value_error	(	Batch &	batch,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

Referenced by operator>>().

Variable Documentation

core::Size const protocols::jd2::archive::ADD_BATCH = 103

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), protocols::jd2::archive::MPIArchiveJobDistributor::process_message(), protocols::jd2::archive::ArchiveManager::queue_batch(), and protocols::jd2::archive::MPIArchiveJobDistributor::sync_batches().

core::Size const protocols::jd2::archive::BATCH_SYNC = 101

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), and protocols::jd2::archive::MPIArchiveJobDistributor::process_message().

core::Size const protocols::jd2::archive::CANCEL_BATCH = 104

Referenced by protocols::jd2::archive::ArchiveManager::cancel_batch(), and protocols::jd2::archive::MPIArchiveJobDistributor::process_message().

int const protocols::jd2::archive::in_archive_rank_(2)

int const protocols::jd2::archive::in_file_buf_rank_(0)

int const protocols::jd2::archive::in_master_rank_(1)

our setup of dedicated processes...

int const protocols::jd2::archive::in_min_client_rank_(3)

core::Size const protocols::jd2::archive::JOB_COMPLETION = 105

Referenced by protocols::jd2::archive::ArchiveManager::go().

core::Size const protocols::jd2::archive::MPI_ARCHIVE_TAG = 12310925

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::_notify_archive(), protocols::jd2::archive::ArchiveManager::go(), and protocols::jd2::archive::MPIArchiveJobDistributor::master_to_archive().

core::Size const protocols::jd2::archive::QUEUE_EMPTY = 102

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), and protocols::jd2::archive::ArchiveManager::go().