SegmentHybridizer.cc File Reference

repurposing logic and some functions from CartesianHybridze protocols for segment insertions and chain closure More...

#include <protocols/seeded_abinitio/SegmentHybridizer.hh>
#include <protocols/seeded_abinitio/SegmentHybridizerCreator.hh>
#include <utility/string_util.hh>
#include <utility/exit.hh>
#include <core/scoring/ScoreFunction.hh>
#include <boost/foreach.hpp>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/util.hh>
#include <core/conformation/Conformation.hh>
#include <basic/Tracer.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <numeric/xyzVector.hh>
#include <numeric/random/random.hh>
#include <core/pose/selection.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/ConstraintSetMover.hh>
#include <protocols/comparative_modeling/coord_util.hh>
#include <core/scoring/rms_util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/Energies.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/picking_old/vall/util.hh>
#include <core/fragment/IndependentBBTorsionSRFD.hh>
#include <core/fragment/util.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/model_quality/rms.hh>
#include <boost/unordered/unordered_map.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::seeded_abinitio

Functions
static thread_local basic::Tracer	protocols::seeded_abinitio::TR ("protocols.seeded_abinitio.movers.SegmentHybridizer")
static thread_local basic::Tracer	protocols::seeded_abinitio::TR_ccd ("protocols.seeded_abinitio.movers.SegmentHybridizer_ccd")

Detailed Description

repurposing logic and some functions from CartesianHybridze protocols for segment insertions and chain closure

Author

Eva-Maria Strauch (evas0.nosp@m.1@uw.nosp@m..edu)