SequenceCouplingConstraint.cc File Reference

This is a constraint that refers to a core::sequence::SequnceCopuling? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored. More...

#include <protocols/constraints_additional/SequenceCouplingConstraint.hh>
#include <core/conformation/Residue.hh>
#include <core/sequence/SequenceCoupling.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreType.hh>
#include <basic/Tracer.hh>
#include <utility/file/file_sys_util.hh>
#include <core/id/AtomID.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/func/XYZ_Func.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/OptionKeys.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::constraints_additional

Functions
static thread_local basic::Tracer	protocols::constraints_additional::TR ("protocols.constraints_additional.SequenceCouplingConstraint")

Detailed Description

This is a constraint that refers to a core::sequence::SequnceCopuling? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.

Author

HetuKamisetty