util.cc File Reference

August 2008 job distributor as planned at RosettaCon08 - Base class. More...

#include <protocols/jd2/util.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/MPIMultiCommJobDistributor.hh>
#include <protocols/jd2/JobInputter.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/jd2/MPIWorkPoolJobDistributor.hh>
#include <basic/message_listening/MessageListenerFactory.hh>
#include <protocols/evaluation/util.hh>
#include <core/pose/Pose.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <utility/mpi_util.hh>
#include <utility/assert.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/moves/Mover.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::jd2

Functions
void	protocols::jd2::register_options ()
static thread_local basic::Tracer	protocols::jd2::TR ("protocols.jd2.JobDistributor")
void	protocols::jd2::output_intermediate_pose (core::pose::Pose const &pose, std::string const &stage_tag, int copy_count, bool score_only)
	end parser interface, start Job Distributor interface///////////// More...
std::string	protocols::jd2::current_output_name ()
	gets used output name of pose ask jd for current-job —> ask jobOutputter for name of this job More...
std::string	protocols::jd2::current_batch ()
bool	protocols::jd2::jd2_used ()
	is this application running with jd2 — used for some code that yields backward compatability with old JobDistributor More...
std::string	protocols::jd2::current_output_filename ()
	call the 'filename' accessor of the current job-distributor with the current job More...
void	protocols::jd2::write_score_tracer (core::pose::Pose const &pose_in, std::string tracer_point)
JobOP	protocols::jd2::get_current_job ()
core::pose::PoseCOP	protocols::jd2::get_current_jobs_starting_pose ()
void	protocols::jd2::add_job_data_to_ss (core::io::silent::SilentStructOP ss, JobCOP job_op)
void	protocols::jd2::set_native_in_mover (protocols::moves::Mover &mover)
core::Size	protocols::jd2::current_replica ()
	returns 0 if no replicas (i.e., multiple processes per job ) otherwise it returns the sub-rank of the process within the job starting at 1 More...

Detailed Description

August 2008 job distributor as planned at RosettaCon08 - Base class.

Author

Oliver Lange