BranchAngleOptimizer.hh File Reference

definition of BranchAgnleOptimizer class and methods More...

#include <protocols/branch_angle/BranchAngleOptimizer.fwd.hh>
#include <protocols/branch_angle/BranchCoef1.fwd.hh>
#include <protocols/branch_angle/BranchCoef2.fwd.hh>
#include <protocols/branch_angle/BranchParam1.fwd.hh>
#include <protocols/branch_angle/BranchParam2.fwd.hh>
#include <core/id/AtomID.fwd.hh>
#include <core/kinematics/tree/Atom.fwd.hh>
#include <core/scoring/mm/MMBondAngleLibrary.fwd.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <map>
#include <set>
#include <utility/vector1.hh>

Classes
class	protocols::branch_angle::BranchAngleOptimizer

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::branch_angle

Functions
void	protocols::branch_angle::branching_atomid1 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1)
	get all atoms bonded to another More...
void	protocols::branch_angle::branching_atomids2 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1, core::id::AtomID &branch_atomid2)
	get 2 branching atoms ordered according their torsion offsets More...
void	protocols::branch_angle::get_branching_atoms2 (core::kinematics::tree::AtomCOP const main_atom2, core::kinematics::tree::AtomCOP &branch_atom1, core::kinematics::tree::AtomCOP &branch_atom2)
	get 2 siblings of an atom ordered according their torsion offsets More...

Detailed Description

definition of BranchAgnleOptimizer class and methods

Author

Colin A. Smith (colin.nosp@m..smi.nosp@m.th@uc.nosp@m.sf.e.nosp@m.du)