SeqprofConsensusOperation.hh File Reference

set every position to be designable to residues observed in sequence profile More...

#include <protocols/toolbox/task_operations/SeqprofConsensusOperation.fwd.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/chemical/AA.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <core/sequence/SequenceProfile.fwd.hh>
#include <core/types.hh>
#include <core/io/ddg/PositionDdGInfo.fwd.hh>
#include <protocols/toolbox/task_operations/RestrictToAlignedSegments.fwd.hh>
#include <protocols/toolbox/task_operations/ProteinInterfaceDesignOperation.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/vector1.hh>
#include <map>

Classes
class	protocols::toolbox::task_operations::SeqprofConsensusOperation
class	protocols::toolbox::task_operations::RestrictConservedLowDdgOperation
	a Task operation that will check whether the amino acid at a position is conserved in the sequence profile and has an unfavorable ddG when mutated to ala. all positions that match this criterion will get set to repacking. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::toolbox
	protocols::toolbox::task_operations

Detailed Description

set every position to be designable to residues observed in sequence profile

Author

Florian Richter, flori.nosp@m.c@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu, april 2011