util.cc File Reference

protocols for folding into density More...

#include <protocols/electron_density/util.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/pose/symmetry/util.hh>
#include <protocols/simple_moves/symmetry/SymMinMover.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <utility/vector1.hh>
#include <numeric/xyz.functions.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::electron_density

Functions
static thread_local basic::Tracer	protocols::electron_density::TR ("protocols.electron_density.util")
protocols::loops::Loops	protocols::electron_density::findLoopFromPatterson (core::pose::Pose &pose, core::Size N, core::Size nloops, bool allow_termini)
protocols::loops::Loops	protocols::electron_density::findLoopFromDensity (core::pose::Pose &pose, core::Real frac, int max_helix_melt, int max_strand_melt)
core::Real	protocols::electron_density::dockPoseIntoMap (core::pose::Pose &pose, std::string align_in)
core::Real	protocols::electron_density::fastTransAlignPose (core::pose::Pose &pose)
core::Real	protocols::electron_density::fast2DRotAlignPose (core::pose::Pose &pose, std::string axis)

Detailed Description

protocols for folding into density

Detailed:

Author

Frank DiMaio