visualize.cc File Reference

3-D visualizations of FoldTree and AtomTree in kinemage format More...

#include <protocols/viewer/visualize.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/Edge.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/types.hh>
#include <core/conformation/Conformation.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <fstream>
#include <core/chemical/AtomType.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::viewer

Functions
void	protocols::viewer::print_node (std::ostream &out, int residue_num, int atom_num, core::conformation::Conformation const &conf, std::string extras="")
void	protocols::viewer::print_node (std::ostream &out, int residue_num, std::string atom_name, core::conformation::Conformation const &conf, std::string extras="")
void	protocols::viewer::print_interres_bond (std::ostream &out, core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, core::conformation::Conformation const &conf)
void	protocols::viewer::dump_residue_kinemage (std::ostream &out, core::conformation::Residue const &rsd, core::conformation::Conformation const &conf)
void	protocols::viewer::dump_structure_kinemage (std::ostream &out, core::conformation::Conformation const &conf)
	A better way to visualize the structure is use Prekin or KiNG's File | Import | Molecules command. More...
void	protocols::viewer::dump_foldtree_kinemage (std::ostream &out, core::kinematics::FoldTree const &fold_tree, core::conformation::Conformation const &conf)
void	protocols::viewer::visit_atomtree_node (std::ostream &out, core::kinematics::tree::Atom const &katom, core::conformation::Conformation const &conf)
void	protocols::viewer::dump_atomtree_kinemage (std::ostream &out, core::kinematics::AtomTree const &atom_tree, core::conformation::Conformation const &conf)
void	protocols::viewer::dump_pose_kinemage (std::string const filename, core::pose::Pose const &pose)

Detailed Description

3-D visualizations of FoldTree and AtomTree in kinemage format

Author

Ian W. Davis